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...agcatggagtaatttatgatcattataaggaacttctgttattgtacaagcaccttatttattccctgaaagtttacagctatttcatttcattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAGGCTCTGATGCGTTTGTTATGGGATTGAGTTCTGCTCAATCACAGCTCT
species | Zea mays |
transcript | GRMZM2G167999_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAEST: gi|6056606|gb|AW091011.1|AW091011
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
EST: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAEST: gi|67025265|gb|CO454014.1|CO454014
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
EST: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAEST: gi|6020795|gb|AW065723.1|AW065723
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
EST: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAEST: gi|211189104|gb|FL252863.1|FL252863
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
EST: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAEST: gi|32919061|gb|CF023873.1|CF023873
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
EST: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAEST: gi|211234744|gb|FL433588.1|FL433588
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
EST: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG GTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
genomic: ACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAGgtaagatgtt ... cattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGA
acaagcaccttatttattccctgaaagtttacagctatttcatttcattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAGGCTCTGATGCGTTTGTTATGGGATTGAGTTCTGCTCAATCACAGCTCT
tttcatttc CT-rich tract
tatttcatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcatggagtaatttatgatcattataaggaacttctgttattgtacaagcaccttatttattccctgaaagtttacagctatttcatttcattgtacagGTAGCTAACTATGTGGTTGAGAAACTCGTTCTTGACAAACCATTGGATGGAGGCTCTGATGCGTTTGTTATGGGATTGAGTTCTGCTCAATCACAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
-gcatgga
- - - - - - - - - - - - - - - -acttctg
- - - - - - - - - - - - - - - - - - - - - - -acaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt