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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatgatgccccctgctatataaatctgacacagggtgctttgtaaccattgctttcataagttattttttctgatgcttattttctttatataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG

Basic information

species Zea mays
transcript GRMZM2G167999_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os12g06810.3 (Oryza sativa), 3'ss of exon 5
taatgatgccccctgctatataaatctgacacagggtgcttt---gtaaccattgctttcataagtta---ttttttctgatgcttattttctttatataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG
      |  |  |     |  |  |   ||||||||||| ||    ||  |||  || ||||     |   |  |  |||||| |  |||  ||| | ||||| || || || || || || || ||||||||||| || |||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| 
------tttctgcaaaagttgatgttatacacagggtgcctttgcatagacataactgtcatggaacaaactagtcactgatgttattttcttttctttaatgtagGTGTGGATTCTACTTGCATCCTGCTGAAGGGTCACCTGCACCGAACATAACACAAGGGAAACTTAGTGCTCCACGGATATTGCGGATTCACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71317699|gb|DR795606.1|DR795606
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|6056606|gb|AW091011.1|AW091011
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|67025265|gb|CO454014.1|CO454014
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|6020795|gb|AW065723.1|AW065723
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|211189104|gb|FL252863.1|FL252863
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|32919061|gb|CF023873.1|CF023873
EST:     TGGTGTGTGGACTGCATTACTCTCAATCGATATCCCAAGGAGAATACAAA                         ATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
genomic: TGGTGTGTGGACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC
EST: gi|211234744|gb|FL433588.1|FL433588
EST:     ACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAA                         ATGGGGGTTTTATTTACACCCTGCGGAAGGCTCGCCTGCACCAAACATAAC
genomic: ACTGCATTACTCTCAATCGATATCCAAAGGAGAATACAAAgtaaacgctc ... tataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accattgctttcataagttattttttctgatgcttattttctttatataatgcagATGCGGGTTTTATTTACACCCTGCTGAAGGCTCGCCTGCACCAAACATAACTCAAGGGAAGCTTAGTGCTCCACGGATATTGCGAATTCACAAG
                                cttattttctttat  CT-rich tract
                 ttattttttctgatgc  TA-rich tract