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gttaggatgattgcttgaccacgcaggcattatttatgctgtgtccttgcgtaaccatattcctctgaattgtaccaactgaggcctgagtatttaaccaaacaacaacaacaaaaaaactgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGGAGAGTGGTTACAGGATAACTTCCACAGCGGCCACCAATGACCAAGCTG
species | Zea mays |
transcript | GRMZM2G164265_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAAGTTGGACTTCCTGTACCCTAGCGAAGGCATCCATCGGCGATGEST: gi|149102515|gb|EE287878.2|EE287878
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGA-GTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|149097990|gb|EE183935.2|EE183935
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|148974692|gb|EE025499.2|EE025499
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|71430774|gb|DR811824.1|DR811824
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|149031683|gb|EE154868.2|EE154868
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|78113586|gb|DV531977.1|DV531977
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|149098314|gb|EE184284.2|EE184284
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|148937186|gb|EC881367.2|EC881367
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|37419877|gb|CF647624.1|CF647624
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|71300241|gb|DR786191.1|DR786191
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|148999277|gb|EE036205.2|EE036205
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|148950556|gb|EC896133.2|EC896133
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|71764976|gb|DR962913.1|DR962913
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|32855731|gb|CD995412.1|CD995412
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAACCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATCCATCGGCGATGGEST: gi|5555573|gb|AI881524.1|AI881524
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAACCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATEST: gi|71300237|gb|DR786190.1|DR786190
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCAT
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|33093570|gb|CF053564.1|CF053564
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAACCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCEST: gi|148950415|gb|EC895982.2|EC895982
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACC
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGEST: gi|33093597|gb|CF053591.1|CF053591
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAACCGCTGGGGCGTAGTTATGTCATGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTAEST: gi|148939598|gb|EC884226.2|EC884226
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTA
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
ccaactgaggcctgagtatttaaccaaacaacaacaacaaaaaaactgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGGAGAGTGGTTACAGGATAACTTCCACAGCGGCCACCAATGACCAAGCTG
atttaac putative branch site (score: 3)
aacaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggatgattgcttgaccacgcaggcattatttatgctgtgtccttgcgtaaccatattcctctgaattgtaccaactgaggcctgagtatttaaccaaacaacaacaacaaaaaaactgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGGGAGAGTGGTTACAGGATAACTTCCACAGCGGCCACCAATGACCAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG