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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctacttctttgcacacctgatataaagcttgtataatgcctcattgcctcctagttttgacatcccaacgaagggaactatctgcacaatcaactgtctgaagctacagctcaggaacgtactgtaagaaatatctgaatgtatagttcaaactttgtgcgtttttcagATCCTCCCGGTTAGCATCAAGAGCCTTGGCGGAAGCATCGCAACACTGGCCAACTGGCTGACATCCTTCGCCATAACAATGACGACGAACTTGATGCTCA

Basic information

species Zea mays
transcript GRMZM2G160504_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160504_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 3'ss of exon 15
gtacgctacttctttgcacacctgatataaagcttgtataatgcctcattgcctcctagttttgacatcccaacgaagggaactatctgcacaatcaactgtctgaagctacagctcaggaacgtactgtaagaaatatctgaatgtatagttcaaactttgtgcgtttttcagATCCTCCCGGTTAGCATCAAGAGCCTTGGCGGAAGCATCGCAACACTGGCCAACTGGCTGACATCCTTCGCCATAACAATGACGACGAACTTGATGCTCA
                           || |||||     ||| |||||   |     |  |||  ||      |||| |    ||   ||    ||  ||  |           |  ||| | |  ||| |||    ||||||     | ||| ||||| ||   |||| ||||||||||||||||| |||||||| || |  |||||| | || || || ||||||||||| |||||||| |  |||||||||||  | ||||||||||| |
--------------------------gtatagcttc----atggctcataatcatacggccttggaatttagctgaagag---cattcacatggcca--tgatt-----------tttggagcat-ttgtcagatg-gtctgaagactcacttccaactt-gtatatttt-cagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCAACTGGCTTACATCCTTTGGAATAACAATGACAGCAAACTTGATGCTTA

upper sequence: GRMZM2G160504_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 3'ss of exon 15
gtacgctacttctttgcacacctgatataaagcttgtataatgcctcattgcctc-ctagttttgacatcccaacgaagggaactatctgcacaatcaactgtctgaagcta-cagctcaggaacgtactgtaagaaatatctgaatgtatagttcaaactttgtgcgtttttcagATCCTCCCGGTTAGCATCAAGAGCCTTGGCGGAAGCATCGCAACACTGGCCAACTGGCTGACATCCTTCGCCATAACAATGACGACGAACTTGATGCTCA
                                   ||||||||| |     | |  ||     |||  |    |      || | ||   ||||  || |  | ||  || |  | |||||| |    || |||| ||| |    || |  |||| || ||||||  ||| || |||||||||| |||||||||||||| ||||| |||||| | || ||||| ||||||  ||| |||||||  || |||||||||||  | || ||| | ||||
-----------------------------------gtataatgctttgccccatagctcacaatgatgttagtatttttagagc-attgacacatccaccattttgttgcaagtatctcaggcatcagct-taagtaatctaaagattt-cagttaaatctttgtttgttctt-agATCCTCCCAGTTAGCATCAAGAGTCTTGGGGGAAGCTTTGCGACACTTGCCAACATGCTTACATCCTGGGCAATAACAATGACAGCAAATTTGTTACTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacgtactgtaagaaatatctgaatgtatagttcaaactttgtgcgtttttcagATCCTCCCGGTTAGCATCAAGAGCCTTGGCGGAAGCATCGCAACACTGGCCAACTGGCTGACATCCTTCGCCATAACAATGACGACGAACTTGATGCTCA
                                             cgtttttc  CT-rich tract
          taagaaatat  TA-rich tract