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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactgagattcctgacagagcaatcagttttaatggtattggcacacagtttccatgttttcaactgttaagacatttacatcgttacagGTATGGTGAAGGATGGAACTTCGGTGAAGTTGCGGAAAATCAACGTGGGATAAATGGATCCCAGCTAAATATGAGTGGCACTGGGATTGGTAG

Basic information

species Zea mays
transcript GRMZM2G158043_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158043_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 3'ss of exon 7
gtaaggactgagattcctga----cagagcaatcagttttaatggtattggcacacagtttccatgttttcaactgttaa-gacatttacatcg---ttacagGTATGGTGAAGGATGGAACTTCGGTGAAGTTGCGGAAAATCAACGTGGGATAAATGGATCCCAGCTAAATATGAGTGGCACTGGGATTGGTAG
|||||||||  ||||  | |    |||| ||||||||||| ||||| |  | |   |  ||   ||  ||  |||| ||| || |    |||     || ||||||||||||||||||| |||| ||||| |||||  ||||| | ||||| ||||||| ||||||| | |||||||||||||| || ||||||||
gtaaggacttggattgttcagtttcagaacaatcagttttcatggtctcagtattaa--tttagtgcattgtactgataatgataagggcatttaatttccagGTATGGTGAAGGATGGGACTTTGGTGAGGTTGCACAAAATAAGCGTGGAATAAATGCATCCCAGATTAATATGAGTGGCACAGGAATTGGTAG

upper sequence: GRMZM2G158043_T01 (Zea mays), 3'ss of exon 15
lower sequence: AT5G04360.1 (Arabidopsis thaliana), 3'ss of exon 15
---------------------gtaaggactgagattcctgacagagcaatcagttttaatggtattggcacacagtttccatgttttcaactgttaagacatttacatcgtta-cagGTATGGTGAAGGATGGAACTTCGGTGAAGTTGCGGAAAATCAACGTGGGATAAATGGATCCCAGCTAAATATGAGTGGCACTGGGATTGGTAG
                     |    |  ||  | |  |   | |    | |  |    |    | |  | | | |||      | | |  ||||  |  ||   | || | | ||| ||||| |||||||||||||| ||||||||||| ||||||  |||||| |||||||  || ||| | ||| |  | || || || ||||| ||
gtaagtcttggctatttttcggacttgcatgcaagttttacgacattcgttatgtccttttccctcgtgaaataattttggccatataatttgttgtgctatcc-cttcatcatcagATATGGCGAAGGATGGAACTTTGGTGAAGTTGCTGAAAATGGACGTGGAATAAATGCGTCACAGTTCAATTTAGGCGGGACAGGAATTGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396203|gb|DN229072.1|DN229072
EST:     CAAAGCCTTACAATTGATGAACATGGAGTAGATGGTTCAAAGATATACTT                         GTATGGTGAAGGATGGAACTTCGGTGAAGTTGCGGAAAATCAACGTGGGAT
genomic: CAAAGCCTTACAATTGATGAACATGGAGTAGATGGTTCAAAGATATACTTgtaaggactg ... atcgttacagGTATGGTGAAGGATGGAACTTCGGTGAAGTTGCGGAAAATCAACGTGGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattggcacacagtttccatgttttcaactgttaagacatttacatcgttacagGTATGGTGAAGGATGGAACTTCGGTGAAGTTGCGGAAAATCAACGTGGGATAAATGGATCCCAGCTAAATATGAGTGGCACTGGGATTGGTAG
                                       atttacat  TA-rich tract