1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gttaatcagttcttcagaacatttcttttgaactcttgatttgtttgatatgtatgtgaaagcccttaggttttcaaatgtatttcatggttcttgtttgatatgtgggtgtggttttattcattatctgttgtttctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG
species | Zea mays |
transcript | GRMZM2G157462_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAG CTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTEST: gi|78180891|gb|DV551264.1|DV551264
genomic: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAGgttaatcagt ... tctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACT
EST: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAG CTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTEST: gi|31353959|gb|CD438316.1|CD438316
genomic: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAGgttaatcagt ... tctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACT
EST: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAG CTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTEST: gi|32857965|gb|CD997646.1|CD997646
genomic: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAGgttaatcagt ... tctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACT
EST: CTTAATGAGAANAGTGNAAAG CTTGNGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTEST: gi|31354322|gb|CD438679.1|CD438679
genomic: CTTAATGAGAAGAGTGGAAAGgttaatcagt ... tctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACT
EST: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAG CTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTEST: gi|7031283|gb|AW461021.1|AW461021
genomic: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAGgttaatcagt ... tctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACT
EST: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAG CTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACT
genomic: CTAATGGGTGGAGCAAAAGATGGTTTGTTCTTAATGAGAAGAGTGGAAAGgttaatcagt ... tctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACT
ttcttgtttgatatgtgggtgtggttttattcattatctgttgtttctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG
gtttgat putative branch site (score: 360)
ttgtttct putative PPT
ttttattcattatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaatcagttcttcagaacatttcttttgaactcttgatttgtttgatatgtatgtgaaagcccttaggttttcaaatgtatttcatggttcttgtttgatatgtgggtgtggttttattcattatctgttgtttctatgccagCTTGGGTACACAAAGAAACAAGAGGAGAGACATTTTCGTGGTGTCATCACTCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA