1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtacgggtaattatcttgttgtcggcgctcgctgtacctccatgtttgtgcaatgactgacgcagagttgcatccgttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGACCACTTAGCAGTGGTTCGGAGACTACCAAAGAGGCAAGTCCATCAACCT
species | Zea mays |
transcript | GRMZM2G156956_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGAEST: gi|4966476|gb|AI691332.1|AI691332
genomic: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
EST: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGAEST: gi|60394908|gb|DN227777.1|DN227777
genomic: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
EST: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAEST: gi|5915119|gb|AW052760.1|AW052760
genomic: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACA
EST: GTGCCGTCCTTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGAEST: gi|67012060|gb|CO440809.1|CO440809
genomic: GTGCCG-CCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
EST: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGAEST: gi|78024790|gb|DV493177.1|DV493177
genomic: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
EST: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGAEST: gi|71332239|gb|DR803045.1|DR803045
genomic: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
EST: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGAEST: gi|37377624|gb|CF625431.1|CF625431
genomic: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
EST: TGGCCCGAACGCAGGAGACCAG GTACCATTCCCTGTGGGTAACAATGTTTGTTCTCGGTCCGGGAGGAACAGAEST: gi|32851005|gb|CD990686.1|CD990686
genomic: TGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
EST: GGTGCCGTCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGAEST: gi|78076812|gb|DV505246.1|DV505246
genomic: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
EST: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAG GAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
genomic: GGTGCCGCCCTATGCTTTTCCACAAAGATGGCCCGAACGCAGGAGACCAGgtacgggtaa ... ttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGA
ctgtacctccatgtttgtgcaatgactgacgcagagttgcatccgttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGACCACTTAGCAGTGGTTCGGAGACTACCAAAGAGGCAAGTCCATCAACCT
gactgac putative branch site (score: 2)
tccgttctt putative PPT
ttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgggtaattatcttgttgtcggcgctcgctgtacctccatgtttgtgcaatgactgacgcagagttgcatccgttcttatcagGAACCATTCCCTGTGGGTAACAATGTTCGTTCTCGGTCCGGGAGGAACAGACCACTTAGCAGTGGTTCGGAGACTACCAAAGAGGCAAGTCCATCAACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG