Sequence
atgc intronic sequence ATGC exonic sequencegtaaatgagataccatgatcacaagtacaatatattatgaatcaagcttagatattgtgtttataaacttatcttttgtgatgttttcagAGCTTTACAGTATTGTTGGAAGACCCAATGTATTTGTTTATGGTGAGCTAAGGACCGCTACTGAAAATTTTAGTTCCAATAACCTTCTTGGTGAAGGAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os04g52606.1 (Oryza sativa), 3'ss of exon 5
gtaaatgagataccatgatcacaagtacaatatattatgaatcaagcttagatattgtgtttataaact--tatcttttgtgatgttttcagAGCTTTACAGTATTGTTGGAAGACCCAATGTATTTGTTTATGGTGAGCTAAGGACCGCTACTGAAAATTTTAGTTCCAATAACCTTCTTGGTGAAGGAGG
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------------------gtacaggaccactaggttc--aaccgag--taaatgggaagctcataaagtgatgtatctttttatgtttgcagAGTTGTACAGTATTGTTGGAAGACCCAATGTAATCAGTTATGGTGAGCTAAGGTCCGCAACTGAAAATTTTAGTTCCAGCAACCTTCTTGGTGAAGGAGG
upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os04g52640.2 (Oryza sativa), 3'ss of exon 18
gtaaatgagataccatgatcacaagtacaatatattatgaatcaagcttagatattgtgtttataaact--tatcttttgtgatgttttcagAGCTTTACAGTATTGTTGGAAGACCCAATGTATTTGTTTATGGTGAGCTAAGGACCGCTACTGAAAATTTTAGTTCCAATAACCTTCTTGGTGAAGGAGG
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gtacatggcacacta-ggcca-----acaatatatctttaaccgagc--aaacaggaagctaataaattgatgtaccttttcgtgtttgcagAGCTGTACAGTATTGTTGGAAGACCTAATATATTCAGTTATGGTGAACTAAGGTCCGCAACTGAAAATTTTAGTTCCAGCAACCGTCTTGGTGAAGGAGG
upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 3'ss of exon 19
gtaaatgagataccatgatcacaagtacaatatattatgaatcaagcttagatattgtgtttataaact--tatcttttgtgatgttttcagAGCTTTACAGTATTGTTGGAAGACCCAATGTATTTGTTTATGGTGAGCTAAGGACCGCTACTGAAAATTTTAGTTCCAATAACCTTCTTGGTGAAGGAGG
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gtacatggcacactatgctcacat------tgtatccttgaccaggc--aaacaagaagttaataaattgatgttcctttttatgttcgcagAGCTATACAGTATTGTTGGAAGACCTAATGTATTCAGTTATAGTGAACTAAGGTCTGCAACTGAAAATTTTAGTTCCAGCAACCGTCTTGGTGAAGGAGG
upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 3'ss of exon 15
gtaaatgagataccatgatcacaagtacaatatattatgaatcaagcttagatattgtgtttataaact--tatcttttgtgatgttttcagAGCTTTACAGTATTGTTGGAAGACCCAATGTATTTGTTTATGGTGAGCTAAGGACCGCTACTGAAAATTTTAGTTCCAATAACCTTCTTGGTGAAGGAGG
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gtacatggcacactaggctcacaa------tatatccttgactaggc--aaactagaagttaataaattgatgtatatttttatgtttgcagAGCTATACAGTATTGTCGGAAGACCTAATGTATTCAGTTATAGTGAACTAAGGTCTGCAACTGAAAATTTTAGTTCCAGCAACCGCCTTGGTGAAGGAGG
upper sequence: GRMZM2G155837_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 3'ss of exon 17
gtaaatgagataccatgatcacaagtacaatatattatgaatcaagcttagatattgtgtttataaact--tatcttttgtgatgttttcagAGCTTTACAGTATTGTTGGAAGACCCAATGTATTTGTTTATGGTGAGCTAAGGACCGCTACTGAAAATTTTAGTTCCAATAACCTTCTTGGTGAAGGAGG
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gtacatggtatactaggctca--------atggatccttaaccgagc--aaaaaggaagctaatagattgacatgcctttttatgttg-cagAGCTGTACTGTATTGTTGGAAGACCTAATGTATTCAGTTATGGTCAACTAAGGTCTGCAACTGAAAATTTTAATTTCAGCAACCGCCTTGGTGAAGGAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgaatcaagcttagatattgtgtttataaacttatcttttgtgatgttttcagAGCTTTACAGTATTGTTGGAAGACCCAATGTATTTGTTTATGGTGAGCTAAGGACCGCTACTGAAAATTTTAGTTCCAATAACCTTCTTGGTGAAGGAGG
tgttttc CT-rich tract
atattgtgtttataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaatgagataccatgatcacaagtacaatatattatgaatcaagcttagatattgtgtttataaacttatcttttgtgatgttttcagAGCTTTACAGTATTGTTGGAAGACCCAATGTATTTGTTTATGGTGAGCTAAGGACCGCTACTGAAAATTTTAGTTCCAATAACCTTCTTGGTGAAGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG