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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaatttttttaacctgtttaacttattgctgttgtgttctcaacgatatctgtgtactattaatgttattgttgtaacattttttgttctcaattgcagCTTCTGCTCTCCCAAGCATGAACAATGACAGATGTAATGGATCTAATCTAAACCCGAGAAGGATTGAAAATATATTTTCTCATCCTCGCCAACCACGGTC

Basic information

species Zea mays
transcript GRMZM2G155123_T03
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155123_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os05g03430.2 (Oryza sativa), 3'ss of exon 15
tgaatttttttaacctgtttaacttattgct-gttgtgttctcaacgatatctgtgtactattaatgttattgttgtaacattttttgttctcaattgcagCTTCTGCTCTCCCAAGCATGAACAATGACAGATGTAATGGATCTAATCTAAACCCGAGAAGGATTGAAAATATATTTTCTCATCCTCGCCAACCACGGTC
| || || | | |||| | | | ||| || || | | ||||| ||| ||| | | ||||||||||||| | | |||| |||| ||| ||| ||| ||| || || |||| || |||||||| |||||||||||||||||||||||||| || |||||
ggtgttcccaccactatcatcatgtattatcagcaattattgttgtgattgctcagt-tggtccaaaatattggcataattcctttactcgttttttgcagCTTCTGCATTTCTGAGCACAAACATTGAAAGACGTAGCGGAGCTGATTTAAATCCAAGAAGGATAGAAAATATATTTTCTCATCCTCGCCAGCCTCGGTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016116|gb|CO444865.1|CO444865
EST:     GCCAAAAGTTCCATCAAAAGAGGCAGGAGTTGAACCTTTACTTGATGCTG                         CTTCTGCTCTCCCAAGCATGAACAATGACAGATGTAATGGATCTAATCTAA
genomic: GCCAAAAGTTCCATCAAAAGAGGCAGGAGTTGAACCTTTACTTGATGCTGgtttgtctcc ... tcaattgcagCTTCTGCTCTCCCAAGCATGAACAATGACAGATGTAATGGATCTAATCTAA
EST: gi|67011631|gb|CO440380.1|CO440380
EST:     GCCAAAAGTTCCATCAAAAGAGGCAGGAGTTGAACCTTTACTTGATGCTG                         CTTCTGCTCTCCCAAGCTTGAACAATGACAGATGTAATGGATCTAATCTAA
genomic: GCCAAAAGTTCCATCAAAAGAGGCAGGAGTTGAACCTTTACTTGATGCTGgtttgtctcc ... tcaattgcagCTTCTGCTCTCCCAAGCATGAACAATGACAGATGTAATGGATCTAATCTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatctgtgtactattaatgttattgttgtaacattttttgttctcaattgcagCTTCTGCTCTCCCAAGCATGAACAATGACAGATGTAATGGATCTAATCTAAACCCGAGAAGGATTGAAAATATATTTTCTCATCCTCGCCAACCACGGTC
                           ttgtaac  putative branch site (score: 2)
 cattttttgttctc  CT-rich tract
 tattaatgttattgtt  TA-rich tract