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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggggtgtttggtttttagggactaatttttagtccctacattttattccattttagttccaaaattgctaaatatggaaactaaaactctattttaatttctatatttgacaatttatatactaaaatggaataaaatgaagggactaaacattagtcccttgaaaccaaacaccccctcagTCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTTAAGGCCCCGTTTGGTTTGAGGGACTAAAGATTAGTCCCTCCATTTTAGT

Basic information

species Zea mays
transcript GRMZM2G154621_T01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166450752|gb|EG175006.1|EG175006
EST:     CCCTTATCTCCATGCTCAG                         TCAAGCTAAGGTTGTTTAGCGAGG-AAATGTATGGGGTACCTACTGTAGTT
genomic: CCCTTATCTCCATGCTCAGggggtgtttg ... accccctcagTCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTT
EST: gi|8551594|gb|BE128939.1|BE128939
EST:     GGCAGCCGCCGAGGTGGAAATTTTTGTCGACCCCTTATCTCCATGCTCAG                         TCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTT
genomic: GGCAGCCGCCGAGGTGGAAATTTTTGTCGACCCCTTATCTCCATGCTCAGggggtgtttg ... accccctcagTCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTT
EST: gi|78180216|gb|DV550589.1|DV550589
EST:     GGCAGCCGCCGAGGTGGAAATTTTTGTCGACCCCTTATCTCCATGCTCAG                         TCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTT
genomic: GGCAGCCGCCGAGGTGGAAATTTTTGTCGACCCCTTATCTCCATGCTCAGggggtgtttg ... accccctcagTCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTT
EST: gi|8665683|gb|BE186499.1|BE186499
EST:     GGCAGCCGCCGAGGTGGAAATTTTTGTCGACCCCTTATCTCCATGCTCAG                         TCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTT
genomic: GGCAGCCGCCGAGGTGGAAATTTTTGTCGACCCCTTATCTCCATGCTCAGggggtgtttg ... accccctcagTCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaataaaatgaagggactaaacattagtcccttgaaaccaaacaccccctcagTCAAGCTAAGGTTGTTTAGCGAGGAAAATGTATGGGGTACCTACTGTAGTTAAGGCCCCGTTTGGTTTGAGGGACTAAAGATTAGTCCCTCCATTTTAGT
                gactaaa  putative branch site (score: 2)
                                            caccccctc  putative PPT
     taaaatgaa  TA-rich tract