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gtgtgtactcagtaaccctaacaataacaacatacttctaaccataattggaggaaaatatctgaaatgcagaaatatctcccatcaactagactagtttgcttatctggttgtttagcaaaggaaaaaaacgctagggatacatttagaagtcttctggtctttgattgtgtctctttgacaattcagATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAGCATCCAAGAGGCATCATGGTTGAGGTGTACTGGGATCAGGATGAAAATG
species | Zea mays |
transcript | GRMZM2G142249_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGGTACCCTGGTGACTCTCAACCTGTCATCAGGAACAACAATTCAG ATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAGEST: gi|31349231|gb|CD433588.1|CD433588
genomic: CTGAAGGTACCCTGGTGACTCTCAACCTGTCATCAGGAACAACAATTCAGgtgtgtactc ... gacaattcagATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAG
EST: CTGAAGGTACCCTGGTGACTCTCAACCTGTCATCAGGAACAACAATTCAG ATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAGEST: gi|211094981|gb|FL279273.1|FL279273
genomic: CTGAAGGTACCCTGGTGACTCTCAACCTGTCATCAGGAACAACAATTCAGgtgtgtactc ... gacaattcagATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAG
EST: CTGAAGGTACCCTGGTGACTCTCAACCTGTCATCAGGAACAACAATTCAG ATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAG
genomic: CTGAAGGTACCCTGGTGACTCTCAACCTGTCATCAGGAACAACAATTCAGgtgtgtactc ... gacaattcagATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAG
tagggatacatttagaagtcttctggtctttgattgtgtctctttgacaattcagATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAGCATCCAAGAGGCATCATGGTTGAGGTGTACTGGGATCAGGATGAAAATG
ctttgac putative branch site (score: 82)
tctctttg CT-rich tract
atacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtactcagtaaccctaacaataacaacatacttctaaccataattggaggaaaatatctgaaatgcagaaatatctcccatcaactagactagtttgcttatctggttgtttagcaaaggaaaaaaacgctagggatacatttagaagtcttctggtctttgattgtgtctctttgacaattcagATTCCCAAGGGGGCTCGTTTCGTTGGTATTCCTGGAACTGAGACAGAGGAGCATCCAAGAGGCATCATGGTTGAGGTGTACTGGGATCAGGATGAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG