1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGATGATTATTGGGAGTTTAACCATGGTGTAATGGCATCTTATGTTAAAGAGA
species | Zea mays |
transcript | GRMZM2G135283_T03 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|148973318|gb|EE024403.2|EE024403
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|6194529|gb|AW146633.1|AW146633
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGATGAGGTCACTCTTCTTGCAEST: gi|60352787|gb|DN219760.1|DN219760
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-ATGAGGTCACTCTTCTTGCA
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|67017024|gb|CO445773.1|CO445773
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|60344488|gb|DN211461.1|DN211461
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|108953686|gb|EC364842.1|EC364842
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGACGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|71299009|gb|DR785497.1|DR785497
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|32867520|gb|CF007202.1|CF007202
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|60354435|gb|DN221408.1|DN221408
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|60343439|gb|DN210412.1|DN210412
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|40336482|gb|CK370552.1|CK370552
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|113700941|gb|EE678445.1|EE678445
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|32850232|gb|CD989913.1|CD989913
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|6102053|gb|AW126523.1|AW126523
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|67013913|gb|CO442662.1|CO442662
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|37393418|gb|CF633973.1|CF633973
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|14204327|gb|BG838004.1|BG838004
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|211502770|gb|FL432440.1|FL432440
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGAAGEST: gi|5804699|gb|AI979669.1|AI979669
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGAC---AAGgtatgctcta ... tttgcaga
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|6449712|gb|AW181252.1|AW181252
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|148945830|gb|EC891119.2|EC891119
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG AAGAGAAGGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|37391313|gb|CF632898.1|CF632898
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-ATG-AGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|211373640|gb|FL261169.1|FL261169
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGAAGEST: gi|211373639|gb|FL261168.1|FL261168
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGAC---AAGgtatgctcta ... tttgcaga
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|60357206|gb|DN224179.1|DN224179
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGATEST: gi|89249961|gb|DY621747.1|DY621747
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGAT
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACEST: gi|5915216|gb|AW052857.1|AW052857
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCCCEST: gi|60353152|gb|DN220125.1|DN220125
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... tttgcagaagA-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
ggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGATGATTATTGGGAGTTTAACCATGGTGTAATGGCATCTTATGTTAAAGAGA
ttcttac putative branch site (score: 43)
cttccctcttatccat putative PPT
ttttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcagaagAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCACGATGATTATTGGGAGTTTAACCATGGTGTAATGGCATCTTATGTTAAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA