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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaatagtattttttgtgttgattgaacatccattggattttcatatagttgcttgagagggactaattaattatattttgtccggctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATCATCGGAACCCTTTCCCAACATTTTTCTTAAGGGGTCTTAACGTGTCTC

Basic information

species Zea mays
transcript GRMZM2G134396_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G134396_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os07g49270.1 (Oryza sativa), 3'ss of exon 16
--------------------gttagtaatagtattttttgtgttgattgaacatccattgga----ttttcatatagttgcttgagag----ggactaattaattatattttgtccggctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATCATCGGAACCCTTTCCCAACATTTTTCTTAAGGGGTCTTAACGTGTCTC
                     ||  | ||  | ||||| | |   |      ||| |||| |    | |  || | |||   |  ||     | |  || |||  || ||||||  | || |  | |||||||||| || |||||||| || || ||||||||| ||||||| || ||||| || ||||||||||||||||||||| |||| || |||||||| ||||
gtaactagtattttgtgttcattcctcatcatttttttagcgc--aacagctatcaattgaacacctatcaattttgttttctcggatctttgaataaactaaccatcttttgtttgcctataattagATTGGTCTTGCCATGTCTCCTTTGAGCAACAACTCATTGTTTATTGATTATCACCGAAACCCTTTCCCAACATTTTTCCTAAGAGGCCTTAACGTTTCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14203330|gb|BG837007.1|BG837007
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTGAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|67028452|gb|CO457201.1|CO457201
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|21987227|gb|BQ778755.1|BQ778755
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTGAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|74237693|gb|DT645607.1|DT645607
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|71299097|gb|DR785545.1|DR785545
EST:     CCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: CCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|149090162|gb|EE179462.2|EE179462
EST:     TCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|211424036|gb|FL301688.1|FL301688
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|33090962|gb|CF050956.1|CF050956
EST:     TACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|71299098|gb|DR785546.1|DR785546
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|32931798|gb|CF036610.1|CF036610
EST:     ACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: ACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|211424037|gb|FL301689.1|FL301689
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|211424038|gb|FL301690.1|FL301690
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|78121620|gb|DV540004.1|DV540004
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
EST: gi|211424039|gb|FL301691.1|FL301691
EST:     TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAG                         ATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT
genomic: TGAACCTAAAGAAATCCCCTGTACTTCAGTACCTGTATTATCTTGCTCAGgttagtaata ... ctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatatagttgcttgagagggactaattaattatattttgtccggctgtgttcagATTGGTCTAGCAATGTCTCCCTTAAGTAACAACTCACTGTTTATCGACTATCATCGGAACCCTTTCCCAACATTTTTCTTAAGGGGTCTTAACGTGTCTC
                     actaattaattatatt  TA-rich tract