1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaacgactgatgtctttgttcagttgagatataagtgtttttttttgttcttccgaagtcagacctgttctcttccgataatgcaacagGTATGAAGAAGCTCGAGAGGAAGAGAAGCTTCGGAACCAAAAGGAGGACTTCAGTGACATGGTGGCAGAG
species | Zea mays |
transcript | GRMZM2G132060_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAA GTATGAAGAAGEST: gi|61118624|gb|DN559585.1|DN559585
genomic: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAAgtaacgactg ... aatgcaacagGTATGAAGAAG
EST: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAA GTATGAAGAAGEST: gi|9952816|gb|BE639399.1|BE639399
genomic: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAAgtaacgactg ... aatgcaacagGTATGAAGAAG
EST: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAA GTATGAAGAAGCTCGAGAGGAAGAGAAGCTTCGGAACCAAAAGGAGGACTTEST: gi|211159310|gb|FL243896.1|FL243896
genomic: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAAgtaacgactg ... aatgcaacagGTATGAAGAAGCTCGAGAGGAAGAGAAGCTTCGGAACCAAAAGGAGGACTT
EST: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAA GTATGAAGAAGCTCGAGAGGAAGRGAAGCTTCGGAACCAAAAGGAGGACTTEST: gi|211159307|gb|FL243893.1|FL243893
genomic: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAAgtaacgactg ... aatgcaacagGTATGAAGAAGCTCGAGAGGAAGAGAAGCTTCGGAACCAAAAGGAGGACTT
EST: ACCATCCAACCCGAGGAACTKGAAGCCATGGATGATGTTCTGGCAGCCAA GTATGAAGAAGCTCGAGAGGAAGAGAAGCTTCGGAACCAAAAGGAGGACTT
genomic: ACCATCCAACCCGAGGAACTGGAAGCCATGGATGATGTTCTGGCAGCCAAgtaacgactg ... aatgcaacagGTATGAAGAAGCTCGAGAGGAAGAGAAGCTTCGGAACCAAAAGGAGGACTT
gtgtttttttttgttcttccgaagtcagacctgttctcttccgataatgcaacagGTATGAAGAAGCTCGAGAGGAAGAGAAGCTTCGGAACCAAAAGGAGGACTTCAGTGACATGGTGGCAGAG
tttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgactgatgtctttgttcagttgagatataagtgtttttttttgttcttccgaagtcagacctgttctcttccgataatgcaacagGTATGAAGAAGCTCGAGAGGAAGAGAAGCTTCGGAACCAAAAGGAGGACTTCAGTGACATGGTGGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG