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gttgtctccctcataaacaattcattgaaattatatttgttctggtaccaactacagttgttttgattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
species | Zea mays |
transcript | GRMZM2G131756_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|211540330|gb|FL320588.1|FL320588
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTTTTAGAACAGAAGAAATACAANCA-TGCTTCTGGGAGGGEST: gi|211151599|gb|FL276380.1|FL276380
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAA-CAATGCTTCTGG-AGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|60339031|gb|DN206004.1|DN206004
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|60358415|gb|DN225388.1|DN225388
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|60347567|gb|DN214540.1|DN214540
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|31364194|gb|CD448549.1|CD448549
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: CATATTCAAAG GTCTAAGAACAGAAGAAATACACCAATGCTTCTGGAGGGEST: gi|211181361|gb|FL452266.1|FL452266
genomic: CATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTTTAAGAACAGAAGAAATACAMCAATGCTTCTGGAGGGEST: gi|60394289|gb|DN227159.1|DN227159
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|211151600|gb|FL276381.1|FL276381
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: TTCGGGACTTCAGTACCCACCATATTCAAAG GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|9731007|gb|BE509759.1|BE509759
genomic: TTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|5901234|gb|AW042334.1|AW042334
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|211428318|gb|FL475012.1|FL475012
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAG GTTTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGGEST: gi|60353813|gb|DN220786.1|DN220786
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
EST: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAA- GTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
genomic: GCAAAGGCGCATGGTCTTTTTCGGGACTTCAGTACCCACCATATTCAAAGgttgtctccc ... gattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
attcattgaaattatatttgttctggtaccaactacagttgttttgattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
ttttgat putative branch site (score: 4)
ttgaaattatatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtctccctcataaacaattcattgaaattatatttgttctggtaccaactacagttgttttgattatgtagGTCTAAGAACAGAAGAAATACAACAATGCTTCTGGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG