1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtatttctttttgacatattttcaacactaattttggcggcatcgtcatgaaagaatccttttatttatatacgaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAATTTAAGAAACTGTATGATGACCTCACCACTGGTTTCCGCAATCTCGAA
species | Zea mays |
transcript | GRMZM2G128877_T03 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5770168|gb|AI973342.1|AI973342
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|13149764|gb|BG320086.1|BG320086
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGMTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|67018748|gb|CO447497.1|CO447497
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|4646572|gb|AI491316.2|AI491316
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|6827260|gb|AW330903.1|AW330903
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: GTTTGGGCGATCT-TTTTATCGCCTAGT ATCTCAAAAGTTCGAGGGTCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5296280|gb|AI783050.1|AI783050
genomic: GTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5846764|gb|AI999847.1|AI999847
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|32939925|gb|CF044744.1|CF044744
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|60291764|gb|DN190003.1|DN190003
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|211152801|gb|FL123511.1|FL123511
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCNTAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGAEST: gi|5871663|gb|AW018134.1|AW018134
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|4630580|gb|AI621454.1|AI621454
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5847131|gb|AW000210.1|AW000210
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|32833833|gb|CD973511.1|CD973511
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5804554|gb|AI979524.1|AI979524
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|33103191|gb|CF063151.1|CF063151
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5846817|gb|AI999900.1|AI999900
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|33103198|gb|CF063158.1|CF063158
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|4572998|gb|AI586647.1|AI586647
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5846863|gb|AI999946.1|AI999946
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|67040096|gb|CO466351.1|CO466351
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|149076737|gb|EE165383.2|EE165383
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|33101606|gb|CF061566.1|CF061566
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|83278503|gb|DV942511.1|DV942511
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|33095505|gb|CF055499.1|CF055499
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCCAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5343199|gb|AI795384.1|AI795384
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5296225|gb|AI782905.1|AI782905
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|5325051|gb|AI783242.1|AI783242
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: GATCTAATTTTATTCCGGCCTAGTT ATCTCAAAAGTTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCEST: gi|5325051|gb|AI783242.1|AI783242
genomic: GATCTA-TTTTAT-C-G-CCTAGT-gtaagtattt ... gaaattacagATCTCAAAAGTT-CGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGC
EST: GATCTAATTTTATTCCGGCCTAGTT ATCTCAAAAGTTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCEST: gi|211156008|gb|FL123543.1|FL123543
genomic: GATCTA-TTTTAT-C-G-CCTAGT-gtaagtattt ... gaaattacagATCTCAAAAGTT-CGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGC
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAEST: gi|32910829|gb|CF015641.1|CF015641
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|32929306|gb|CF034118.1|CF034118
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|67025855|gb|CO454604.1|CO454604
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|32835087|gb|CD974765.1|CD974765
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|32928630|gb|CF033442.1|CF033442
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|32846470|gb|CD986151.1|CD986151
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGC ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|61236472|gb|DN586224.1|DN586224
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAEST: gi|32940788|gb|CF045607.1|CF045607
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
EST: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGT ATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
genomic: ACATACGGTGTCATAAAACACCGTTTGGGCGATCTATTTTATCGCCTAGTgtaagtattt ... gaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAA
taattttggcggcatcgtcatgaaagaatccttttatttatatacgaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAATTTAAGAAACTGTATGATGACCTCACCACTGGTTTCCGCAATCTCGAA
cactaat putative branch site (score: 2)
ttttatttatatacga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatttctttttgacatattttcaacactaattttggcggcatcgtcatgaaagaatccttttatttatatacgaaattacagATCTCAAAAGTTCGAGGATCCTGCCGAAGGTGAAGAAGCTTTGGTCGGCAAATTTAAGAAACTGTATGATGACCTCACCACTGGTTTCCGCAATCTCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA