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...ttttcttattataatcgtcttacaatattgttcctgaagcaactggcatttagtatcaagttatttatattgacatatattgacatttgagcctcatcagGTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAGCGTAAGATGATGAAAAACAAGCCTATGAATTAGAACTCCAGAGACAACA
species | Zea mays |
transcript | GRMZM2G128688_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG GTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAGEST: gi|32936632|gb|CF041451.1|CF041451
genomic: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGgcaagtatca ... gcctcatcagGTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAG
EST: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG GTTACTCCCAAGGTCGTAEST: gi|5740370|gb|AI948060.1|AI948060
genomic: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGgcaagtatca ... gcctcatcagGTTACTCCCAAGGTCGTA
EST: TGAGTTTGGAAAAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG GTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAGEST: gi|149075127|gb|EE163620.2|EE163620
genomic: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGgcaagtatca ... gcctcatcagGTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAG
EST: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG GTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAGEST: gi|30705078|gb|CD058658.1|CD058658
genomic: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGgcaagtatca ... gcctcatcagGTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAG
EST: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG GTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAGEST: gi|211059036|gb|FL463420.1|FL463420
genomic: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGgcaagtatca ... gcctcatcagGTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAG
EST: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAG GTTACTCCCAAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAA
genomic: TGAGTTTGGAAGAGGCAATTGGATATGTTGCTGCAGATGAGCTTATTGAGgcaagtatca ... gcctcatcagGTTACTCCC-AAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAA
gcatttagtatcaagttatttatattgacatatattgacatttgagcctcatcagGTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAGCGTAAGATGATGAAAAACAAGCCTATGAATTAGAACTCCAGAGACAACA
tattgac putative branch site (score: 2)
cctcatc putative PPT
tatcaagttatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttcttattataatcgtcttacaatattgttcctgaagcaactggcatttagtatcaagttatttatattgacatatattgacatttgagcctcatcagGTTACTCCCAAGGTCGTACGTCTTCGAAAGAAGTACTTGGATTCCACTAAGCGTAAGATGATGAAAAACAAGCCTATGAATTAGAACTCCAGAGACAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - -ctgaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatt