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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggggacactagatttaatctttcccctctaaccacagctatctctttagttaatacattttcattttttgaacactattggcttcatctatcatacagATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCA

Basic information

species Zea mays
transcript GRMZM2G115564_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G115564_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os06g44230.1 (Oryza sativa), 3'ss of exon 15
ttggggacactagatttaatctttcccctctaaccacagctatctctttagtt--aatacattttcattttttgaacactattggcttcatctatcatacagATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCA
 ||     |         |  || ||    |||   |   ||    | |||||    | ||||  |  | | ||||||||||  || |||||  |  | ||||| ||||||||  ||||||||||||||||||| |||||||| ||||||
-tgttcttatggataaccacattaccatgataagttccaatactgttatagttttgctgcattgcccctctctgaacactatatgcatcatcacttct-cagATTCGAACTTCACTGCAATGTCTGGCTTTACGACGGGAGGGAGATGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211090146|gb|FL283408.1|FL283408
EST:     CTGTTGGTCTCCCAGTTGTTCAGCCCTACAAGAAATATAAGAATTATATG                         ATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCA
genomic: CTGTTGGTCTCCCAGTTGTTCAGCCCTACAAGAAATATAAGAATTATATGgtcagttact ... tatcatacagATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttagttaatacattttcattttttgaacactattggcttcatctatcatacagATACGAACTTCTTTGCAATGTCTGGCTTTACGGCGGGAGGGTGATGCA
    agttaat  putative branch site (score: 4)
                                      cttcatct  putative PPT
      ttaatacattttcatt  TA-rich tract