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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgaattttttaaatgtaatataattagtacctccaaaaaaatatgctcgtactcctgtgtatatatatcaacttaagcaatcgcaaacttgaactttttagtaccacgtctaagttgtctctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC

Basic information

species Zea mays
transcript GRMZM2G109383_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109383_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 3'ss of exon 15
gtaagtgaattttttaaatgtaatataattagtacctccaaaaaaatatgctcgtactcctgtgta-tatatatcaacttaagcaatcgcaaacttgaactttttagtaccacgtctaagttgtctct----ttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC
                         | |||| |             |||| |||  || |||  || |   | || | |||   ||    | | ||  |   || ||||| |  |||||  |||  ||    |  |||| ||| |||||||||| ||||| ||||||||||| || ||||| || || ||||||||||| ||||||||||||||||| ||||| |||||||| ||||| 
-------------------------tcattaatgttattt------tatggtcg--ctactgcctagtggttttccagttagctaaa---atattttca---ttcagtactagctctaaactgtaccttatatcctcagATTGATCAAGGAGATTCGGTCAGATGTTTCTGATGTGGTTGCCGCAGATGAGTTTGAGTATAAGGATCCTGTTGATGGTTCTGTCTCCAAGCATCAGGGT

upper sequence: GRMZM2G109383_T02 (Zea mays), 3'ss of exon 15
lower sequence: PP1S4_12V6.1 (Physcomitrella patens), 3'ss of exon 16
-----------------------------gtaagtgaattt-tttaaatgtaatataattagtacctccaaaaaaatatgctcgtactc-ctgtgtatatatatca---acttaagcaatcgcaaacttg-----aactttttagtaccac-----gtctaagttgtctctttg--tcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC
                              |     ||||| |||   |||    |   | |  | | |||       || ||    |  ||||  | | || ||    | | | |||||    || |||     || ||||     |  |     || | | ||||   | ||   ||| ||| ||||||||||  |  |||||||| | || ||    | |||||||||||||||||| |||||||| |||||                         
gtaacttccgcactcattttgtgccactgcttctcaaatttatttccgtgtttattgtgtggcgcattcaagccgtagtggtccaggtggctgttgagaaatgtcgcttattaatgcaattctgaatttgcttgtaatttttgtactctgctcagAGTGTGATTTGTGGATCTGACCCAGCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGAGTTTGAGTATAAGGATCCAGTTGA-------------------------

upper sequence: GRMZM2G109383_T02 (Zea mays), 3'ss of exon 15
lower sequence: PP1S4_12V6.3 (Physcomitrella patens), 3'ss of exon 16
-----------------------------gtaagtgaattt-tttaaatgtaatataattagtacctccaaaaaaatatgctcgtactc-ctgtgtatatatatca---acttaagcaatcgcaaacttg-----aactttttagtaccac-----gtctaagttgtctctttg--tcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC
                              |     ||||| |||   |||    |   | |  | | |||       || ||    |  ||||  | | || ||    | | | |||||    || |||     || ||||     |  |     || | | ||||   | ||   ||| ||| ||||||||||  |  |||||||| | || ||    | |||||||||||||||||| |||||||| |||||    ||  | ||||  |||||||| 
gtaacttccgcactcattttgtgccactgcttctcaaatttatttccgtgtttattgtgtggcgcattcaagccgtagtggtccaggtggctgttgagaaatgtcgcttattaatgcaattctgaatttgcttgtaatttttgtactctgctcagagtgtgatttgtggatctgacccagCTTGATCAAGGAGATTAGACCTGATGTTGCCGAGGTTCAAGAAGCTGACGAGTTTGAGTATAAGGATCCAGTTGACCAGTCCATATCCAGCCACCAGGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211190027|gb|FL186117.1|FL186117
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|16927237|gb|BM080306.1|BM080306
EST:     AGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: AGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|29130007|gb|CB380711.1|CB380711
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|7216825|gb|AW562947.1|AW562947
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|30088268|gb|CB886473.1|CB886473
EST:     AGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: AGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|120480298|gb|EH210799.1|EH210799
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|149109220|gb|EE293196.2|EE293196
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|18167299|gb|BM337138.1|BM337138
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|20508129|gb|BQ279907.1|BQ279907
EST:     CTTATGGCAAACCTAGTAAGCGTGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211341564|gb|FL066570.1|FL066570
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATSSGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|12970130|gb|BG266829.1|BG266829
EST:     CTTATGGCAAACCTAGTAAGCGTGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211341566|gb|FL066572.1|FL066572
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAGCAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCGGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67025110|gb|CO453859.1|CO453859
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|213175101|gb|FM189490.1|FM189490
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGGTCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211541125|gb|FL006426.1|FL006426
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|12046898|gb|BF729037.1|BF729037
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCTCGTTTTGATGTTTCTGAAGTAGTTGCAGCTGACG
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATC-CGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACG
EST: gi|211341569|gb|FL066575.1|FL066575
EST:     AGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: AGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|78180558|gb|DV551051.1|DV551051
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|213170007|gb|FM188153.1|FM188153
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67024524|gb|CO453273.1|CO453273
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|32838974|gb|CD978655.1|CD978655
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|211341565|gb|FL066571.1|FL066571
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|60401463|gb|DN234270.1|DN234270
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|31354675|gb|CD439032.1|CD439032
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|32909657|gb|CF014469.1|CF014469
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67022599|gb|CO451348.1|CO451348
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTT
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTT
EST: gi|149013082|gb|EE042781.2|EE042781
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|24768906|gb|CA404035.1|CA404035
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTCTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTCTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|19769326|gb|BQ034047.1|BQ034047
EST:     CTTATGGCAAACCTAGTAAGCGTGCAGTCATCACTTTCTGATGTTAGCAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|78022451|gb|DV490838.1|DV490838
EST:     TAAGCATGCAGTCATCACTTTCGGATGTT-ACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: TAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|19769724|gb|BQ034445.1|BQ034445
EST:     CTTATGGCAAACCTAGTAAGCGTGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|67018536|gb|CO447285.1|CO447285
EST:     CT-ATGGCANACCTAGTA-GCATGCAGTCATCACTTTCTGATGTTAACA-                         GTTGGTCAAGGAGA-CCGGTCTGATGTTTCTGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGA
EST: gi|67014425|gb|CO443174.1|CO443174
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|5296227|gb|AI782907.1|AI782907
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|149014022|gb|EE043540.2|EE043540
EST:     TATGGCAACCCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: TATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|31356718|gb|CD441075.1|CD441075
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
EST: gi|148974650|gb|EE025448.2|EE025448
EST:     CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAA                         GTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA
genomic: CTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 461

AATGTTGATGCAGGGGCTGCTAAGGAGCTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 477

AATGTTGATGCAGGGGCTGCTAAGGAGCTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 234

AATGTTGATGCAGGGGCTGCTAAGGAGCTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 884

AATGTTGATGCAGGGGCTGCTAAGGAGCTTATGGCAAACCTAGTAAGCATGCAGTCATCACTTTCTGATGTTAACAAgtaagtgaat ... tctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcaatcgcaaacttgaactttttagtaccacgtctaagttgtctctttgtcagGTTGGTCAAGGAGATCCGGTCTGATGTTTCTGAAGTAGTTGCAGCTGACGAGTTTGAGTACAAGGATCCTGTTGATGGCTCTGTGTCCAAGCACCAGGGC
                                        ttgtctcttt  CT-rich tract
                 aacttttta  TA-rich tract