1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtagctttaaaaatgttgactcatttcttttgaaacatatgtagtttagatccttgatatttgttggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAAAAGAAGT
species | Zea mays |
transcript | GRMZM2G107696_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAG AGCAGCTAGAAGCTTTTAEST: gi|71330491|gb|DR802012.1|DR802012
genomic: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTA
EST: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAG AGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAAEST: gi|31361116|gb|CD445473.1|CD445473
genomic: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
EST: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAG AGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAAEST: gi|20300736|gb|BQ163679.1|BQ163679
genomic: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
EST: ACAACGTTCTTTCTTTGAAGCCATACCACTGCATGAGGCAACTAATAAAG AGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAAEST: gi|44682206|gb|CK787254.1|CK787254
genomic: ACAACGTTCTTTCTTTG-AG-CATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
EST: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAG AGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
genomic: TGACAACGTTCTTTCTTTGAGCATACCACTGCATGAGGCAACTAATAAAGgtagctttaa ... ggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAA
tcatttcttttgaaacatatgtagtttagatccttgatatttgttggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAAAAGAAGT
ccttgat putative branch site (score: 5)
ttgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctttaaaaatgttgactcatttcttttgaaacatatgtagtttagatccttgatatttgttggatgtgcagAGCAGCTAGAAGCTTTTAATGAGAAGAAAGCTGCAATGAACTTGGATGGAAAAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT