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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttctttttgttcaagaaaaactggatctgatacatatttattgagagcaagctacaactgtctatcttgtagATCACATTGATGATTCTGAGAAACTTCGTCCTGAGGAACTAAACCAACAAACAATCGAAGCTCTGGTCGCAGAGAGTAACTTG

Basic information

species Zea mays
transcript GRMZM2G106056_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G106056_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os04g54340.1 (Oryza sativa), 3'ss of exon 15
--------------------------------------------------------gtatttctttttgttcaagaaaaactgg-atctgatacatatttattga--gagcaagctacaactgtctatctt----gtagATCACATTGATGATTCTGAGAAACTTCGTCCTGAGGAACTAAACCAACAAACAATCGAAGCTCTGGTCGCAGAGAGTAACTTG
                                                        | ||     | ||   |  || |  ||  || | || |  | || ||     | |   |||   || | ||| |     ||||   | |||||||| ||||||||||||||||| |||||||||||||||||||| || |||||| |||| || || | |||||||
gtattcctttatgtttaagaaagacagtgcacaagttatttacatagtggcagaatgcatcaagctatgaggagcaacagatgccatgttattctgacttttttgtttaactgactatgtctatgtatatatacagTAGGCAATATTGATGACTCTGAGAAACTTCGTCCCGAGGAACTAAACCAACAAACTATTGAAGCTTTGGTTGCCGAAAATAACTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactggatctgatacatatttattgagagcaagctacaactgtctatcttgtagATCACATTGATGATTCTGAGAAACTTCGTCCTGAGGAACTAAACCAACAAACAATCGAAGCTCTGGTCGCAGAGAGTAACTTG
       atctgat  putative branch site (score: 4)
                                           tctatctt  putative PPT
          tgatacatatttatt  TA-rich tract