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...taaccaaacaaaatcattcgctgttaagttttacttgttcatttgggctcctgtttttccttaagtacttggaatacttatatgtcttttgtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGCGCTTGATGCAGAGGGCTAGCATCGTGAGGCGGCAATCAGGAGAAGAGC
species | Zea mays |
transcript | GRMZM2G103070_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAG CCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGEST: gi|60397323|gb|DN230139.1|DN230139
genomic: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattctt ... gtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
EST: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAG CCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGEST: gi|71433499|gb|DR814549.1|DR814549
genomic: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattctt ... gtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
EST: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAG CCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGEST: gi|6527106|gb|AW216318.1|AW216318
genomic: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattctt ... gtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
EST: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAG CCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGEST: gi|32833924|gb|CD973602.1|CD973602
genomic: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattctt ... gtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
EST: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAG CCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGEST: gi|33097154|gb|CF057114.1|CF057114
genomic: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattctt ... gtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
EST: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAG CCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGEST: gi|60347761|gb|DN214734.1|DN214734
genomic: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattctt ... gtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
EST: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAG CCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGEST: gi|32935389|gb|CF040201.1|CF040201
genomic: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattctt ... gtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
EST: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAG CCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
genomic: CAGCTAAATCACTCTCTCGTTTTGCAGACGTAATTGCACTCTGCGTTCAGgtatattctt ... gtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTG
ggctcctgtttttccttaagtacttggaatacttatatgtcttttgtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGCGCTTGATGCAGAGGGCTAGCATCGTGAGGCGGCAATCAGGAGAAGAGC
tgtcttttgtttct CT-rich tract
aatacttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaccaaacaaaatcattcgctgttaagttttacttgttcatttgggctcctgtttttccttaagtacttggaatacttatatgtcttttgtttctgcagCCTGAGCCAGAGTTCCGCCCACCCATGTCAGAGGTTGTCCAGCAACTTGTGCGCTTGATGCAGAGGGCTAGCATCGTGAGGCGGCAATCAGGAGAAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - -aaacaaa
- - - - - - - - - cgctgtt
- - - - - - - - - - - - - - - ttacttg
- - - - - - - - - - - - - - - - - - -ttcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacttg