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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtcacatataactaatttagctcataagatgcttgaggcacatgatgaaaggattctaaatgaaggcttaatctcgaaactttgcatattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCCAACTGGTTGACATCCTTTGGAATAACAATGACAGCAAATTTGCTTCTGT

Basic information

species Zea mays
transcript GRMZM2G098679_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G098679_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 3'ss of exon 15
---------------gtatagtcacatataact--aatttagctcataag-atgcttgaggcacatgat----gaaaggattctaaa------tgaaggcttaatctcgaaactttgcatattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCCAACTGGTTGACATCCTTTGGAATAACAATGACAGCAAATTTGCTTCTGT
                 ||| ||| |      |  ||||||||| |  || || |    ||| ||||||    | |    || | |       ||||| || | |  | |    ||| |||||  |||||||| || ||||| ||||||||| | ||||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||| ||| | ||  
gtatagcttcatggctcataatcatacggccttggaatttagctgaagagcattcacatggc-catgatttttggagcatttgtcagatggtctgaagactcacttccaa---cttgtatattttcagATCCTCCCGGTTAGTATCAAGAGTCTCGCAGGAAGCTTTGCGACGCTCGCCAACTGGCTTACATCCTTTGGAATAACAATGACAGCAAACTTGATGCTTA

upper sequence: GRMZM2G098679_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 3'ss of exon 15
----------------------------------gtatagtcacatataactaatttagctcataagatgcttgaggcacatgatgaaaggattc---taaatgaaggcttaatctcgaaactttgcatattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCCAACTGGTTGACATCCTTTGGAATAACAATGACAGCAAATTTGCTTCTGT
                                     || |   | |  | | |   | |    |   || |  | | |  | | | |     |    |||   || | ||    |  || |||||  | ||   ||||||| |||||||||||||||||| | |  |||||||||||||| || ||||||  | | |||||||  | |||||||||||||||||||||| | ||  
gtataatgctttgccccatagctcacaatgatgttagtatttttagagcattgacacatccaccattttgttgcaagtatctcaggcatcagcttaagtaatctaaagatttcagttaaatctttgtttgttcttagATCCTCCCAGTTAGCATCAAGAGTCTTGGGGGAAGCTTTGCGACACTTGCCAACATGCTTACATCCTGGGCAATAACAATGACAGCAAATTTGTTACTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37375628|gb|CF624264.1|CF624264
EST:     CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAG                         ATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
genomic: CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAGgtatagtcac ... atattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
EST: gi|60401580|gb|DN234387.1|DN234387
EST:     CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAG                         ATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
genomic: CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAGgtatagtcac ... atattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
EST: gi|211280254|gb|FL478194.1|FL478194
EST:     CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGSTGAG                         ATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
genomic: CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAGgtatagtcac ... atattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
EST: gi|40333857|gb|CK367927.1|CK367927
EST:     CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAG                         ATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
genomic: CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAGgtatagtcac ... atattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
EST: gi|148953878|gb|EC899256.2|EC899256
EST:     CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAG                         ATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
genomic: CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAGgtatagtcac ... atattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
EST: gi|211084269|gb|FL474824.1|FL474824
EST:     CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAG                         ATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
genomic: CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAGgtatagtcac ... atattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
EST: gi|60350539|gb|DN217512.1|DN217512
EST:     CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAG                         ATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC
genomic: CTGCCTACTCCTTTGGTATGGGTGCCATTCCATGGATCATAATGGCTGAGgtatagtcac ... atattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgatgaaaggattctaaatgaaggcttaatctcgaaactttgcatattggcagATCCTTCCAGTTAGCATCAAGAGTGTGGCAGGAAGCTTTGCGACCCTAGCCAACTGGTTGACATCCTTTGGAATAACAATGACAGCAAATTTGCTTCTGT
            attctaaat  TA-rich tract