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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttccactactattacagattgtttgccgcccttgttgagataagcttgtttaatgccttgtcttttgctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG

Basic information

species Zea mays
transcript GRMZM2G097768_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097768_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os05g50280.1 (Oryza sativa), 3'ss of exon 14
gttagttccactactattacagattgtttgccgcccttgttgagataagcttgtttaatgccttgtcttttgctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG
|||||||  | | ||||       | | |     | ||||||  | ||||  | ||| |||||| | | ||  |||  ||||||||||||||| ||||||||||||| |||||||| || || |||||||| |||||||||
gttagttgaagttctatgtgcatctctcttttctcattgttggcagaagc--gcttattgccttctatgtta-tatcacagGCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166608|gb|BM336447.1|BM336447
EST:     GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: gi|71766861|gb|DR964798.1|DR964798
EST:     GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: gi|193503179|gb|AM937591.1|AM937591
EST:     GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: gi|67016921|gb|CO445670.1|CO445670
EST:     GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: gi|71772625|gb|DR970553.1|DR970553
EST:     GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: gi|149077603|gb|EE166303.2|EE166303
EST:     GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: gi|50325332|gb|CO520458.1|CO520458
EST:     AGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
genomic: AGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: gi|193503551|gb|AM937740.1|AM937740
EST:     GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
genomic: GTTCGCACTTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATT
EST: gi|37374223|gb|CF623456.1|CF623456
EST:     TTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTG                         GCATTTGTGA-TGNCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCAT
genomic: TTATACTCTGTAATGAGTATGCTTTCACTGGCTGGACTTGTGgttagttcca ... gctattccagGCATTTGTGATTG-CATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccgcccttgttgagataagcttgtttaatgccttgtcttttgctattccagGCATTTGTGATTGCATTTTCTCTTGGCTTGGGAGCGATTCCGTGGATCATTATGTCTGAG
                          gtttaat  putative branch site (score: 4)
                                  ccttgtcttttgct  CT-rich tract
                        ttgtttaat  TA-rich tract