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gtaactaactgacgttcttcttcttcttttcgcgcatgatcaatcagctccagcagatatggatgctgcaaagaaaaaaaaaagagagagaaacaattgttgtcaatccatttgcagGTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAACTGGCCACCGGCGTCAAGAAGTCTGGATCGAAGCAGACGGTTCTAACGT
species | Zea mays |
transcript | GRMZM2G097277_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGGATAAAG GTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAAEST: gi|67024258|gb|CO453007.1|CO453007
genomic: CCATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGGATAAAGgtaactaact ... ccatttgcagGTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAA
EST: CCATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGGATAAAG GTGGGTGAAATTTCGGCAC-CAAGCTGTGGATCTAAACATATNCG-TTGCGEST: gi|71757746|gb|DR955683.1|DR955683
genomic: CCATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGGATAAAGgtaactaact ... ccatttgcagGTGG-TGAA-TTTCGGCAATCAAGCTGTGGATCTGAACATAT-CGGTTGTG
EST: CCATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGGATAAAG GTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAAEST: gi|67026679|gb|CO455428.1|CO455428
genomic: CCATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGGATAAAGgtaactaact ... ccatttgcagGTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAA
EST: CATCACTTGGCAGAACGCTAAAGACA-GAGCACTTACCTCAGGGATAA-G GTGGTGAATTTCNGNCAA-CAAGCTGTGGATCTAAACATATCEST: gi|71762148|gb|DR960085.1|DR960085
genomic: CATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGG-ATAAAGgtaactaact ... ccatttgcagGTGGTGAATTTCGG-CAATCAAGCTGTGGATCTGAACATATC
EST: CCATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGGATAAAG GTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAA
genomic: CCATCACTTGGCAGAACGCTAAAGACAAGAGCACTTACCTCAGGATAAAGgtaactaact ... ccatttgcagGTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAA
atgctgcaaagaaaaaaaaaagagagagaaacaattgttgtcaatccatttgcagGTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAACTGGCCACCGGCGTCAAGAAGTCTGGATCGAAGCAGACGGTTCTAACGT
tccattt CT-rich tract
aaagaaaaaaaaaaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactaactgacgttcttcttcttcttttcgcgcatgatcaatcagctccagcagatatggatgctgcaaagaaaaaaaaaagagagagaaacaattgttgtcaatccatttgcagGTGGTGAATTTCGGCAATCAAGCTGTGGATCTGAACATATCGGTTGTGGAACTGGCCACCGGCGTCAAGAAGTCTGGATCGAAGCAGACGGTTCTAACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT