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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgctttctctaaaacaatgtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataagcttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA

Basic information

species Zea mays
transcript GRMZM2G095348_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095348_T01 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 16
gtgcgctttctctaaaacaatgtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataag-cttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
||| | |||||  | || | ||  | |||  |         |||| |||| | ||||   ||||||||||    |||| | |||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | |||| ||||||||| |||||| |||||||||||
gtgtgttttcttgataatactgcctgcttatt--------gtctggtgttgaattcttgaactaacatatttttcttgttgcagTGTCATGGGGTACACATTACTTCTTAGTTTGATTGAGTACAAGACACTTGTGATGCGTGGGGATATTGAACGTGCAAATGATATTTTACCATCCATACCA

upper sequence: GRMZM2G095348_T01 (Zea mays), 3'ss of exon 16
lower sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 16
----gtgcgctttct--ctaaaacaatgtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataagcttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
    |||    ||||   |  |  | |      |||   ||| |  |  |  ||   | || | ||  || ||  |    ||    |||| | || || |||||| | ||| | || ||||||||||||||||| |||||||||||||| |||||||||   || ||||||||| || |||| || || 
gtaagtgaaacttctgcttggattattcaaagttttaaattgcagtaa-tcttgactacttttctgtttatcaattt--tttttctcagTGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATCCCC

upper sequence: GRMZM2G095348_T01 (Zea mays), 3'ss of exon 16
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 16
gtgcgctttctctaaaacaatgtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataa--gcttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
        |   |  | ||||| ||    |  ||   || ||||      | |     ||| ||   | |||  | || |  |||| | || || |||||  ||||| | ||||||||||| |||||||| ||||| |||||||| |||||||||   || ||||||||| || |||| || || 
-------gtaagtggatcaatggtttgcattattcaaaatatctcaatgcagtaatcctgattattttttaactgttttactcagTGTTATGGGATACACGCTACTTTTAAGTTTGATTGAATACAAGACACTTGTCATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCT

upper sequence: GRMZM2G095348_T01 (Zea mays), 3'ss of exon 16
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 16
----gtgcgctttct--ctaaaacaatgtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataagcttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
    |||    ||||   |  |  | |      |||   ||| || |  |  ||   |||| | ||  || ||  |  | ||    |||| | || || |||||| | ||| | || ||||||||||||||||| |||||||||||||| |||||||||   || ||||| ||| |  |||| || || 
gtaagtgaaacttctgcttggattattcaaagttttaaattgcaataa-tcttgactatttttctgtttatcaatt--gtttttctcagTGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGATATTCTGCCATCAATCCCC

upper sequence: GRMZM2G095348_T01 (Zea mays), 3'ss of exon 16
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 3'ss of exon 16
gtgcgctttctctaaaacaatgtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataagcttg---atacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
  |    | || || |    ||| |   |    |||  |  | | ||   | ||||||   ||           |||   || |||| | || |||||||| ||  | || ||  |||||||||||||||| ||||||||||| || ||||| ||  | || | |||||| ||| |  | || || 
--gtaagtgct-tagatttgtgtgtttatataattgagat-tgttctagaagtttctgatgctgttcccctgttttgtggatgcagTGTTATAGGGTACACCTTGTTGCTAAGCCTGATTGAGTACAAGACTCTTGTGATGCGGGGTGATTTAGACAAAGCCAGTGAAATCTTACCTACAATTCCT

upper sequence: GRMZM2G095348_T01 (Zea mays), 3'ss of exon 16
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 20
------gtgcgctttctctaaaacaatgtttcctttcttttgtaacatctgctgttaatttctgtgactaacatataagcttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
          | |||      |  | || |  |  | |||||||||      |  | | ||||||| | |   ||| |      |||||| | ||||| ||||| |||||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || |||||| | ||| | || || || 
gtaagcagatgttttactgttatgattgctaacaatgttttgtaac-----ttactgacttctgtgtccactttatgat-----tacagTGTTATTGGATACACTTTACTTTTAAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGAGATTTGGAACAGGCTAATGAAGTCTTACCTTCAATTCCT

upper sequence: GRMZM2G095348_T01 (Zea mays), 3'ss of exon 16
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 3'ss of exon 16
----gtgcgctttctctaaaac-----aatgtttcctttcttttgtaacatctgc-tgttaatttctgtgactaacatataagcttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
    |||  ||||    | ||      | ||     |   | |||||       | | || |||  |  |       |      |  || |||| |||| || ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||  ||||||  || |||||| ||||| | || || || 
gtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcagTGTCATGGGATACACGTTACTTCTCAGTTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGACCTGGAACGGGCCAATGAACTTTTACCTTCAATTCCC

upper sequence: GRMZM2G095348_T01 (Zea mays), 3'ss of exon 16
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 16
gtgcgctttctctaaaacaatgtttcctttcttttgtaacatctgctgtt--aatttctgtga-ctaacatataa-gcttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
||| |    ||    | |     |||     | |     | | || | ||  ||||  | | |  | |  |||      | || |||| | || || || || |||||||| | |||||||||||||||||| ||||| |||||||| || ||  ||| ||||| |||||||||| | |  || || 
gtgagggagcttgggagctgcacttctgcaatctgactgcttttgttcttgtaattgatctaaatttatttatgttatcttatgcagTGTTATGGGATATACCTTACTTCTCAATTTGATTGAGTACAAGACACTTGTAATGCGTGGAGACTTTCAACGTGCAAGTGAAATTTTACCTTTGATTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttgtaacatctgctgttaatttctgtgactaacatataagcttgatacagTATCATTGGGTACACATTACTTCTGAGTTTGATTGAGTACAAGACCCTTGTGATGCGTGGGGATTTGGAACATGCAAATGAAATTTTATCATCCATACCA
                                  taacatataa  TA-rich tract