1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...aactacactaaaattgtttccacttgagtcattctgtttgctgttcttgcggagaggatcacagaatttatataagcatctatctatttttgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG
species | Zea mays |
transcript | GRMZM2G085747_T05 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|166461245|gb|EG146937.1|EG146937
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGA-TCCTCTTCCCEST: gi|29130947|gb|CB381651.1|CB381651
genomic: TTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATEST: gi|74232917|gb|DT640831.1|DT640831
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACAT
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|211281987|gb|FL018040.1|FL018040
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|26456270|gb|CA827853.1|CA827853
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCEST: gi|22819546|gb|BU499636.1|BU499636
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
EST: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
genomic: TCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTGgtaagccttg ... tgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCC
cttgcggagaggatcacagaatttatataagcatctatctatttttgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG
tctattttt CT-rich tract
aatttatataagcatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactacactaaaattgtttccacttgagtcattctgtttgctgttcttgcggagaggatcacagaatttatataagcatctatctatttttgcaatgcagCCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA