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gtatgacaacctttcaccttcaagtatttggcttttgtgttttactgatagaagtttttccgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG
species | Zea mays |
transcript | GRMZM2G085747_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|71758667|gb|DR956604.1|DR956604
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|166415741|gb|EG211422.1|EG211422
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GTAAATCTGGTTATGCTAATTCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGACCCTTEST: gi|74232917|gb|DT640831.1|DT640831
genomic: GTAAATCTGGTTATGCTAAT-CAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTG-CCCTT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|29130947|gb|CB381651.1|CB381651
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTTTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|76919652|gb|DV167818.1|DV167818
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|40303330|gb|CK347717.1|CK347717
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|211281987|gb|FL018040.1|FL018040
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|4647287|gb|AI622362.1|AI622362
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: AACATG-ATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|74232916|gb|DT640830.1|DT640830
genomic: AACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|26456270|gb|CA827853.1|CA827853
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|78544875|gb|DV622373.1|DV622373
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|22819546|gb|BU499636.1|BU499636
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATEST: gi|30032196|gb|CB834047.1|CB834047
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
EST: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGG GATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
genomic: GGTAAATCTGGTTATGCTAATCAAGCAAACAACATGTATCTATTTCCTGGgtatgacaac ... cgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCAT
accttcaagtatttggcttttgtgttttactgatagaagtttttccgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG
tactgat putative branch site (score: 2)
tttttcc putative PPT
aagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgacaacctttcaccttcaagtatttggcttttgtgttttactgatagaagtttttccgaaaatcagGATTGGTTTAGGTGCCCTTCTTTCAGGTGCCCGGCATGTTTCAGATGGCATGCTTCAAGCAGCAGCTGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA