1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...atctaaaatgaattttaattttggacagagggagtatttatgatggcaagatattctggcaataagattgactgacaatgtactttgaattatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG
species | Zea mays |
transcript | GRMZM2G078576_T04 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAG ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAAEST: gi|87155515|gb|DY400304.1|DY400304
genomic: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
EST: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGTGGAGAAGGGATGAAG ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAAEST: gi|78111274|gb|DV529671.1|DV529671
genomic: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
EST: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAG ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAAEST: gi|166692487|gb|EG166994.1|EG166994
genomic: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
EST: ATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAG ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAAEST: gi|22472877|gb|BU037357.1|BU037357
genomic: ATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
EST: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGTGGAGAAGGGATGAAG ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAAEST: gi|24766669|gb|CA401816.1|CA401816
genomic: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
EST: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAG ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCCCCCTGAGGAAEST: gi|37376751|gb|CF624930.1|CF624930
genomic: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
EST: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAG ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAAEST: gi|148945634|gb|EC890893.2|EC890893
genomic: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
EST: TTGAAGTCATCAATAAAACTTCCCGTTCATGGCGCGGAGAAGGGATGAAG ATGTTTATTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAAEST: gi|166698538|gb|EG154852.1|EG154852
genomic: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
EST: TGAAGTCATCAAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAG ATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCEST: gi|93282383|gb|EB674647.1|EB674647
genomic: TGAAGTCATC-AATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCC
EST: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAG ATGTTTATTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
genomic: TTGAAGTCATCAATAAAACTTGCCGTTCATGGCGCGGAGAAGGGATGAAGgttttagttt ... tatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAA
gcaagatattctggcaataagattgactgacaatgtactttgaattatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG
gactgac putative branch site (score: 134)
ttatttttc putative PPT
aatgtactttgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctaaaatgaattttaattttggacagagggagtatttatgatggcaagatattctggcaataagattgactgacaatgtactttgaattatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG
- - - - - - - - - - - - - - - - - - - tatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttctggc