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...tgtcttagttcatgcccacatgtgagtatgtgacgctctatttccaaattcaactcgcactgatttgtcataactgtttttgtgtatttacaattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAA
species | Zea mays |
transcript | GRMZM2G078576_T03 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTEST: gi|71438781|gb|DR819831.1|DR819831
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTEST: gi|149083574|gb|EE172908.2|EE172908
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTTTCCTTCAATCCCAGCGCCATAAATTTTTTCCCTGTGGAGATTCACCTEST: gi|87155515|gb|DY400304.1|DY400304
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTCTCCTTCAATCCCAACGCCATAAATCTCTTCCCTGTGGAGATTCACCTEST: gi|78111274|gb|DV529671.1|DV529671
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTCTCCTTCAATCCCAGCGCCATAAATCTTTTCCCTGTGGAGATTCACCTEST: gi|71759659|gb|DR957596.1|DR957596
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTTTCCTTCAATCCCAGCGCCATAAATCTTTTCCCTGTGGAGATTCACCTEST: gi|22472877|gb|BU037357.1|BU037357
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTCTCCTTCAATCCCAACGCCATAAATCTCTTCCCTGTGGAGATTCACCTEST: gi|24766669|gb|CA401816.1|CA401816
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCCCCTEST: gi|37376751|gb|CF624930.1|CF624930
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTEST: gi|148945634|gb|EC890893.2|EC890893
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTTTCCTTCAATCCCAGCGCCATAAATTTCTTCCCTGTGGAGATTCACCTEST: gi|93282383|gb|EB674647.1|EB674647
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
EST: CCTGAGGAATTCTTTTTCCCATATGCATGGCGCCTTGTCCTGTCACGGGG ATTTTCCTTCAATCCCAGCCCCATAAATTTTTTCCCTGTGGAGATTCACCT
genomic: CCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGGgtaatcattt ... caattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCT
aaattcaactcgcactgatttgtcataactgtttttgtgtatttacaattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAA
tcataac putative branch site (score: 2)
tttttgtgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcttagttcatgcccacatgtgagtatgtgacgctctatttccaaattcaactcgcactgatttgtcataactgtttttgtgtatttacaattcacagATTCTCCTTCAATCCCAGCGCCATAAATCTCTTCCCTGTGGAGATTCACCTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT