1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...catggggctaacagattttagaagacatctttgtttaccagtttgccaatcatgtgttatcgtaacgatatggaaaaccattctctttattctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGTGTAGTGTACCGGAGAGGGCAAAAGCAGCTGACGAGGCTGTTCCTGAGG
species | Zea mays |
transcript | GRMZM2G078458_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAG TGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGEST: gi|71330008|gb|DR801741.1|DR801741
genomic: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatat ... tctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
EST: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAG TGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGEST: gi|211219812|gb|FL295368.1|FL295368
genomic: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatat ... tctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
EST: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAG TGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGEST: gi|78108130|gb|DV526548.1|DV526548
genomic: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatat ... tctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
EST: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAG TGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGEST: gi|71298468|gb|DR785212.1|DR785212
genomic: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatat ... tctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
EST: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAG TGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGEST: gi|60396915|gb|DN229734.1|DN229734
genomic: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatat ... tctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
EST: CAGTTCGATTCCATTCAGCCAGAAGACTACGCGAG TGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGEST: gi|86469372|gb|DY235742.1|DY235742
genomic: CAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatat ... tctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
EST: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAG TGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTCCCGTTCGTGEST: gi|78122645|gb|DV541029.1|DV541029
genomic: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatat ... tctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
EST: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAG TGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
genomic: GCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatat ... tctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTG
ccaatcatgtgttatcgtaacgatatggaaaaccattctctttattctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGTGTAGTGTACCGGAGAGGGCAAAAGCAGCTGACGAGGCTGTTCCTGAGG
tcgtaac putative branch site (score: 2)
ccattctctttattct putative PPT
tttattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catggggctaacagattttagaagacatctttgtttaccagtttgccaatcatgtgttatcgtaacgatatggaaaaccattctctttattctttctcagTGAAAGCGGCGAGAAGCACGAAAGGAAGTCAAAGACAAACTACCGTTCGTGTGTAGTGTACCGGAGAGGGCAAAAGCAGCTGACGAGGCTGTTCCTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT