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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccatatatacaccacatacaaattattatcatgcaccctgctttcgttcactctagcttcatcactcatcgtggtaactctgttgggatgaatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCCCAGTTACTGGATGCAGACGCTTTTCCGCGAGTCTAGTGGTGCTATGTTC

Basic information

species Zea mays
transcript GRMZM2G077299_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077299_T03 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 3'ss of exon 14
ccatatatacaccacatacaaattattatcatgcaccctgctttcgttcactctagcttcatcactcatcgtggtaactctgttgggatgaatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCCCAGTTACTGGATGCAGACGCTTTTCCGCGAGTCTAGTGGTGCTATGTTC
             |  |   |  |     ||||    ||   || ||    | | | ||  | |   |     ||||   || |   || || |||||||||||||||||||||| || || || ||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| || ||||| ||||||||||| 
----------gttagttttga--tggctccatggtttctttatttgt--gtttttgtttatttaacaagtactgtaataatgcttcaatcaaacaatcagGTGGAACCCAGACGCCATTGTATTTAACTCCTGGCAACAATACGGAACTCCTAGTTACTGGATGCAGACTCTTTTCCGTGAATCTAGCGGTGCTATGTTT

upper sequence: GRMZM2G077299_T03 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os11g03730.3 (Oryza sativa), 3'ss of exon 15
ccatatatacaccacatacaaattattatcatgcaccctgctttcgttcactctagcttcatcactcatcgtggtaactctgttgggatgaatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCCCAGTTACTGGATGCAGACGCTTTTCCGCGAGTCTAGTGGTGCTATGTTC
             |  |    || | |  ||||    ||   || ||    | | | ||  | |   |     ||||   || |   || || |||||||||||||||||||||| || || || ||||||||||| || || || ||||| ||||||||||||||||| |||||| | || ||||| ||||||||||| 
----------gtta-gttttgatgact-ccatggtttctttatttgt--gtttttgtttatttaacaagtactgtaataatgcttcaatcaaacaatcagGTGGAACCCAGACGCCATTGTATTTAACTCCTGGCAACAATATGGAACTCCTAGTTACTGGATGCAGACTCTTTTCGGTGAATCTAGCGGTGCTATGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32832928|gb|CD972606.1|CD972606
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32915958|gb|CF020770.1|CF020770
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|213170538|gb|FM181869.1|FM181869
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|116814377|gb|EC856917.1|EC856917
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32834805|gb|CD974483.1|CD974483
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32838656|gb|CD978334.1|CD978334
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32846404|gb|CD986085.1|CD986085
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32834343|gb|CD974021.1|CD974021
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32915959|gb|CF020771.1|CF020771
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32847114|gb|CD986795.1|CD986795
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32836113|gb|CD975791.1|CD975791
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32846779|gb|CD986460.1|CD986460
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32833806|gb|CD973484.1|CD973484
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32846254|gb|CD985935.1|CD985935
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32865761|gb|CF005443.1|CF005443
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32833276|gb|CD972954.1|CD972954
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCC
EST: gi|32847472|gb|CD987153.1|CD987153
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|74232032|gb|DT639946.1|DT639946
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32846575|gb|CD986256.1|CD986256
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32839169|gb|CD978850.1|CD978850
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTATTCAACTTCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|17970148|gb|BM276913.1|BM276913
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|71769432|gb|DR967369.1|DR967369
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32847067|gb|CD986748.1|CD986748
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACCCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32833492|gb|CD973170.1|CD973170
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|22489289|gb|BU049212.1|BU049212
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|71441725|gb|DR822775.1|DR822775
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGAAACC-AGACGCAAT
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAAT
EST: gi|32833419|gb|CD973097.1|CD973097
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32847159|gb|CD986840.1|CD986840
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32832289|gb|CD971967.1|CD971967
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32834130|gb|CD973808.1|CD973808
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32847619|gb|CD987300.1|CD987300
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32833120|gb|CD972798.1|CD972798
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGC
EST: gi|32847167|gb|CD986848.1|CD986848
EST:     GCTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32847649|gb|CD987330.1|CD987330
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32846820|gb|CD986501.1|CD986501
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
EST: gi|32832861|gb|CD972539.1|CD972539
EST:     GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGAC                         GTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC
genomic: GTTTCCATGGCAAGTTACGCGCCACTATTCGTAAACGACAATGACCAGACgttagtacat ... aatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcactctagcttcatcactcatcgtggtaactctgttgggatgaatcaatcagGTGGAACCCAGACGCAATCGTCTTCAACTCCTGGCAGCATTACGGCACTCCCAGTTACTGGATGCAGACGCTTTTCCGCGAGTCTAGTGGTGCTATGTTC
                          tggtaac  putative branch site (score: 2)
                                             aatcaat  TA-rich tract