1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gttgggatactttgttatgtttggacagttctatgattgggaactgtacagaatgtgacagcatttcttattttaatgtgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATCAGATCTCAAAGATGCCAAATCTTGCATTCACCATAGCAAACAAGACTT
species | Zea mays |
transcript | GRMZM2G077233_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGA-CGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|78179647|gb|DV550020.1|DV550020
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|91876412|gb|EB406369.1|EB406369
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|67023174|gb|CO451923.1|CO451923
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTACGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|211078124|gb|FL447287.1|FL447287
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAC CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|12047192|gb|BF729331.1|BF729331
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|83278626|gb|DV942634.1|DV942634
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|76289739|gb|DV029307.1|DV029307
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|32839672|gb|CD979353.1|CD979353
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGA-CGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|211384116|gb|FL248479.1|FL248479
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|60346328|gb|DN213301.1|DN213301
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|116822883|gb|EC866344.1|EC866344
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|76291014|gb|DV030582.1|DV030582
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|78023269|gb|DV491656.1|DV491656
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTACGCTCATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|60396697|gb|DN229564.1|DN229564
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|31250410|gb|CD219434.1|CD219434
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|8577168|gb|BE129805.1|BE129805
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|109637704|gb|EC591249.1|EC591249
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|32840610|gb|CD980291.1|CD980291
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|32858947|gb|CD998628.1|CD998628
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|5915565|gb|AW053206.1|AW053206
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTACGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATEST: gi|6194440|gb|AW146544.1|AW146544
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
EST: GCTCCGTGAAAACAAGACAANAAGAACTCATTTTGAATTACGCTAATCAG CTCTGTGAGCGTEST: gi|60348336|gb|DN215309.1|DN215309
genomic: GCTCCGTGAAAACAAGACAA-AAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGT
EST: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAG CTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
genomic: AGCTCCGTGAAAACAAGACAAAAGAACTCATTTTGAATTATGCTAATCAGgttgggatac ... tgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCAT
tgattgggaactgtacagaatgtgacagcatttcttattttaatgtgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATCAGATCTCAAAGATGCCAAATCTTGCATTCACCATAGCAAACAAGACTT
ttttaat putative branch site (score: 3)
atttcttattttaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgggatactttgttatgtttggacagttctatgattgggaactgtacagaatgtgacagcatttcttattttaatgtgcattgcagCTCTGTGAGCGTCTCCCTAGCCCCAATGGCGAGTCAACTGTTGATTGCCATCAGATCTCAAAGATGCCAAATCTTGCATTCACCATAGCAAACAAGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG