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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcattttatttgagctggaatgttagtacttcatgcatattttgagtagttccaaataaacatatgatgtggtcaaattcaacattctctattaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAATAGAAGGTGGCTTGAAAAGTGTGTCACTTATTGTGAAAGTCATGATCAA

Basic information

species Zea mays
transcript GRMZM2G073054_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA19G37750.2 (Glycine max), 3'ss of exon 15
-gcattttatttgagctgg--aatgttagtacttcatgcatattttgagtagttccaaataaacatatgatgtggtcaaattcaacattctctattaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAATAGAAGGTGGCTTGAAAAGTGTGTCACTTATTGTGAAAGTCATGATCAA
  ||||| || |         | ||| | |  ||| | |   ||   ||||||   |||  ||   |||  ||| |   |  ||   |  | | ||     ||| | |  || ||| | ||| |||||||||| ||| | ||||| |||||||| ||||||||||| ||||| |||||  |||||  |||||||||||| || 
atcatttcatctccaacaaccactgtcattcattcttactgtttgcaagtagtgtgaaaagaaaccatgg-gtgatttcag-cagtgtctttttttgt-gtagGAAGAACGATGAAGACTGGAAAATGGGTGATATCATCCACACATTAACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTATGCTGAAAGTCATGACCAG

upper sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA03G35020.1 (Glycine max), 3'ss of exon 15
--gcattttatttgagctgg--aatgttagtacttcatgcatattttgagtagttccaaataaacatatgatgtggtcaaattcaacattctctattaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAATAGAAGGTGGCTTGAAAAGTGTGTCACTTATTGTGAAAGTCATGATCAA
   ||||| || |    ||   | ||| | |  ||| | |   || | ||||||   |||  || ||   |||||   || |||| |  | ||  ||     ||| | | ||| ||| | ||| |||||||||| || || ||||| |||||||| ||||||||||| ||||| |||||  |||||  |||||||||||| || 
catcatttcatctccaatgaccactgtcattcgttcttactgtttgtaagtagtgtgaaaagaaaat--catgtg--taatttcagcggtgtccttttgtgtagGAAGAATGATGAAGACTGGAAAATGGGTGATATTGTCCACACATTAACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTATGCTGAAAGTCATGACCAG

upper sequence: GRMZM2G073054_T02 (Zea mays), 3'ss of exon 15
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 3'ss of exon 15
gcattttatttgagctggaatgttagtacttcatgcatattttgagtagttccaaataaacatatgatgtggtcaaattca---acattctctattaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAATAGAAGGTGGCTTGAAAAGTGTGTCACTTATTGTGAAAGTCATGATCAA
   |  |||   || |  |     |||  ||    |||| |||    | ||     |  |  | |  | |  |  | ||||    ||    |||| |   |||| ||  ||| ||||||||| |||||||||||||  | |||||  | || |||||||||||| | ||||| |||||  |||||  |||||||||||| |||
-tttggtataccaggtcaagaaagagttgttttaccatagtttattaattttttccttcatgt-tattataattcatttcacatgcaaatgctatgat-gcagGAAACCTGATGAATATTGGAAAATGGGTGACATTATTCACACGCTCACCAATAGAAGGTGGTTGGAAAAATGTGTTGCTTATGCTGAAAGTCATGACCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67035192|gb|CO463725.1|CO463725
EST:     GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|101386689|gb|EB815361.1|EB815361
EST:     GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|211410788|gb|FL280482.1|FL280482
EST:     GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|27753880|gb|BM378072.1|BM378072
EST:     GATTATCGTCTTCATATGGCTGTACCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|32864974|gb|CF004656.1|CF004656
EST:     GAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
EST: gi|211410789|gb|FL280483.1|FL280483
EST:     GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAA                         GCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA
genomic: GATTATCGTCTTCATATGGCTGTCCCAGACAAATGGATTGAACTTCTGAAgtaagtggtc ... attaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagttccaaataaacatatgatgtggtcaaattcaacattctctattaccacagGCAAAGTGACGAATATTGGGAAATGGGTGACATCGTGCACACCTTAACAAATAGAAGGTGGCTTGAAAAGTGTGTCACTTATTGTGAAAGTCATGATCAA
                                       ttctctatt  CT-rich tract
        aaataaacatatgat  TA-rich tract