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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtctagatcctctctgtctaattgcatttgctttcttgagttgaacgattttagatacgatactccgtacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG

Basic information

species Zea mays
transcript GRMZM2G063909_T03
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063909_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 3'ss of exon 16
gtccgtctagatcctctctgtctaattgcatttgctttc-ttgagttgaacgattttagatacgatactccgtacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
||  ||||| || ||  |||  |   |   ||   |  |  ||  |  |  |  |||| || |||     | |   || ||| | |||||||| ||||| || |||||||| |||||||||||||| || |||
gttagtctaaattctagctgcatggctctcttcagtcccactgtctcaataggatttatat-cgacctatcctc--tttcagGTCTCCAAGTTGTATGAAGTTGTGCCTCCTATCCTCACTGAGCTTGGCAAG

upper sequence: GRMZM2G063909_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 3'ss of exon 16
gtccgtctagatcctctctgtctaattgcatttgctttcttg-agttgaacgatttta----gatac--gatactccgtacgtta-cagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
||  ||||| |   | |||||| || |||||  ||| ||||| |||  ||| || | |    ||| |       ||  ||   |  ||| | |||||||| ||||| || |||||||| |||||||||||||| || |||
gttagtctaaaa--tgtctgtccaactgcatg-gctctcttgcagtccaactatctcattgggattcttatcgatctatatcctgtcagGTCTCCAAGTTGTATGAAGTTGTGCCTCCAATCCTCACTGAGCTTGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211314255|gb|FK994155.1|FK994155
EST:     AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG                         CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: gi|60357508|gb|DN224481.1|DN224481
EST:     AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG                         CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: gi|78076903|gb|DV505337.1|DV505337
EST:     AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG                         CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: gi|60354991|gb|DN221964.1|DN221964
EST:     AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG                         CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: gi|60345083|gb|DN212056.1|DN212056
EST:     AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG                         CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: gi|50331232|gb|CO526358.1|CO526358
EST:     AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG                         CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: gi|40334210|gb|CK368280.1|CK368280
EST:     AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG                         CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
EST: gi|60400601|gb|DN233408.1|DN233408
EST:     AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTG                         CTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
genomic: AAAGGGAGTTTGCCCTGAAGTATTTGCCAGAGGATCCGCTTTTCCAACTGgtccgtctag ... tacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatttgctttcttgagttgaacgattttagatacgatactccgtacgttacagCTGTCCAAGTTATATGAGGTCGTGCCTCCGATCCTCACTGAGCTGGGAAAG
                         attttagata  TA-rich tract