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...atgatgtgcagtaggtctgatagagagttgtctttgactgtttatggaagtgacatttctctgatggtttgtgtgcactgttgcttacattcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATTCATGTCAAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTT
species | Zea mays |
transcript | GRMZM2G063851_T04 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|5901109|gb|AW042209.1|AW042209
genomic: AGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|116813560|gb|EC856011.1|EC856011
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|78179069|gb|DV549442.1|DV549442
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|31364242|gb|CD448597.1|CD448597
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|148929642|gb|EC876096.2|EC876096
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|76010584|gb|DT937754.1|DT937754
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAATTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|31363851|gb|CD448206.1|CD448206
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: AAAGAGTGGAAAG G-TGTTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAEST: gi|6964715|gb|AW433408.1|AW433408
genomic: AAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTG-TTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTA
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|76010585|gb|DT937755.1|DT937755
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|7145414|gb|AW506895.1|AW506895
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|116825307|gb|EC869024.1|EC869024
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTACAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATEST: gi|60395299|gb|DN228168.1|DN228168
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
EST: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAG GTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
genomic: CCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAAAGgtatgtcagt ... tcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTAT
ggaagtgacatttctctgatggtttgtgtgcactgttgcttacattcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATTCATGTCAAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTT
tgcttac putative branch site (score: 2)
ttacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgtgcagtaggtctgatagagagttgtctttgactgtttatggaagtgacatttctctgatggtttgtgtgcactgttgcttacattcaatcatagGTTGTTCCTGGGTTTGGTCATGGAGTTCTGCGTAAGACCGACCCACGGTATTCATGTCAAAGGGAGTTTGCCCTGAAGCATTTGCCCAAGGATCCACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC