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gtatgtgcgaatgcaaccggtagcaatgttcatccagtttagtctttagtgcccccccacccccccaaaaaaaatgtttgtctaatatatcgttgtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGATGCTGGAACTCGGTGCTGCGCTATAGAGATGCGTCCTTTACTTTGTTCT
species | Zea mays |
transcript | GRMZM2G059151_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGEST: gi|67014773|gb|CO443522.1|CO443522
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATG
EST: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGAEST: gi|67014279|gb|CO443028.1|CO443028
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
EST: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGAEST: gi|9742494|gb|BE518657.1|BE518657
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
EST: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGAEST: gi|211286470|gb|FL080391.1|FL080391
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
EST: TGCATCGATGCGTGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTEST: gi|211286474|gb|FL080395.1|FL080395
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGT
EST: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGAEST: gi|16377178|gb|BI991814.1|BI991814
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
EST: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGAEST: gi|149083928|gb|EE173305.2|EE173305
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
EST: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGAEST: gi|211286476|gb|FL080397.1|FL080397
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
EST: TGCATCGATGCGTGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGAEST: gi|211286473|gb|FL080394.1|FL080394
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
EST: TGCATCGATGCGTGATGAGTGGGCCATCAAGAACAGATWCATCAGCCCTG GCCCCATCCARTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTEST: gi|10450958|gb|BE924882.1|BE924882
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACT
EST: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGAEST: gi|211286478|gb|FL080399.1|FL080399
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
EST: TGCATCGATGCGTGATGAGTGGGCCATCAAGAACAGATACATCAGCCCTG GCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
genomic: TGCATCGATGCGTGATGAGTGGGCCCTCAAGAACAGATACATCAGCCCTGgtatgtgcga ... gtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGA
tgcccccccacccccccaaaaaaaatgtttgtctaatatatcgttgtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGATGCTGGAACTCGGTGCTGCGCTATAGAGATGCGTCCTTTACTTTGTTCT
gtctaat putative branch site (score: 220)
aaaaaaaatgtttgtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcgaatgcaaccggtagcaatgttcatccagtttagtctttagtgcccccccacccccccaaaaaaaatgtttgtctaatatatcgttgtcgtgacagGCCCCATCCAGTTCAGTGGCCCTGGAAGTAATGACTCGAACCATACTTTGATGCTGGAACTCGGTGCTGCGCTATAGAGATGCGTCCTTTACTTTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG