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gtgagtccatgtattccttagttcttaaactgttttctcttttccctcgcagataacatttattttcatttacatactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGATGGGGCTTCACATCAGGTGGATTCCAGTGAACTTGCTTTTAAGCTAGCT
species | Zea mays |
transcript | GRMZM2G056393_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TAGAGAAGGGTTTTAAGGAAGCTTGCAATTC AGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGAEST: gi|32932818|gb|CF037630.1|CF037630
genomic: TAGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
EST: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAGGGAAGCTTGCAATTC AGGCTCGTTGATTGGTCATCCTGTTGAAAATGTAAGAATTGTATTGACTGAEST: gi|211184463|gb|FL030548.1|FL030548
genomic: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
EST: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTC AGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGAEST: gi|6194594|gb|AW146698.1|AW146698
genomic: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
EST: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTC AGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGAEST: gi|6020648|gb|AW065681.1|AW065681
genomic: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
EST: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTC AGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGAEST: gi|33093919|gb|CF053913.1|CF053913
genomic: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
EST: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAGGGAAGCTTGCAATTC AGGCTCGTTGATTGGTCATCCTGTTGGAAATGTAAGAATTGTATTGACTGAEST: gi|61119855|gb|DN560816.1|DN560816
genomic: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
EST: AGAGAAAGGTTTTAAGGAAGC-TGCAAATTC AGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGEST: gi|69351603|gb|DR452190.1|DR452190
genomic: AGAGAAGGGTTTTAAGGAAGCTTGC-AATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTG
EST: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTC AGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGAEST: gi|67017174|gb|CO445923.1|CO445923
genomic: TCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
EST: CAAACTTTATACCAGCAATAGAGAAAGGTTTTAAGGGAAGCTTGCA-TTC AGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
genomic: CAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGG-AAGCTTGCAATTCgtgagtccat ... catactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGA
aactgttttctcttttccctcgcagataacatttattttcatttacatactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGATGGGGCTTCACATCAGGTGGATTCCAGTGAACTTGCTTTTAAGCTAGCT
agataac putative branch site (score: 150)
ataacatttattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtccatgtattccttagttcttaaactgttttctcttttccctcgcagataacatttattttcatttacatactgtagAGGCTCGTTGATTGGTCATCCTGTTGAAAATTTAAGAATTGTATTGACTGATGGGGCTTCACATCAGGTGGATTCCAGTGAACTTGCTTTTAAGCTAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA