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...tccttgtatttctgtcttcttaatgaaatgacatgcaattctcctgcctagtttgagggaaaaatccgcttctaacatttgaatattttcaatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCTGGTTTGCTCTTGGAGGGAAACAGAGTTATACAAATAAAAACACTCCTC
species | Zea mays |
transcript | GRMZM2G047310_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211106295|gb|FL022813.1|FL022813
genomic: ACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: GCACATATGAGCAACAGCAGTGGGCAGCAAA-GTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211541601|gb|FL022804.1|FL022804
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|213188773|gb|FM187672.1|FM187672
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211106291|gb|FL022809.1|FL022809
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211106290|gb|FL022808.1|FL022808
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: GCACATATGAGCAACAGCAGTGGGCAGCAAA-GTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211106299|gb|FL022817.1|FL022817
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGGACAGAGAGTTCTGCTTTEST: gi|211106292|gb|FL022810.1|FL022810
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGG-ACAGAGAGTTCTGCTTT
EST: GCACATATGAGCAACAGCAGNGGGCAGC-AAAGTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211541598|gb|FL022801.1|FL022801
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: GCACATATGAGCAACAGCAGTGGGCAGC-AAAGTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211106297|gb|FL022815.1|FL022815
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: AATTTTTGAAG CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|5816386|gb|AI987302.1|AI987302
genomic: AATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: ATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211106298|gb|FL022816.1|FL022816
genomic: ATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: AATTTTTGAAG CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211106296|gb|FL022814.1|FL022814
genomic: AATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAG CCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCEST: gi|211541599|gb|FL022802.1|FL022802
genomic: GCACATATGAGCAACAGCAGTGGGCAGCAAAAGTTGCTGAATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
EST: AATTTTTGAAG CCTGGCATTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
genomic: AATTTTTGAAGgtatgagggc ... aatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTC
gcctagtttgagggaaaaatccgcttctaacatttgaatattttcaatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCTGGTTTGCTCTTGGAGGGAAACAGAGTTATACAAATAAAAACACTCCTC
ttctaac putative branch site (score: 1)
taacatttgaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttgtatttctgtcttcttaatgaaatgacatgcaattctcctgcctagtttgagggaaaaatccgcttctaacatttgaatattttcaatcttacagCCTGGCGTTGCAGTGAAGCACTGCAAGGAGGGGACAGAGAGTTCTGCTTTCTGGTTTGCTCTTGGAGGGAAACAGAGTTATACAAATAAAAACACTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - tgtattt
- - - - - - - - - - - -tgaaatg
- - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatttg