1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ttattgtcattaaccagggagactggaggtcggtcctcttacacttgctcttcttagatctatattttgttttggcatctgattttatgggcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGATGGTACTTGACACACATGGTGAAGTTTTCATTTGGATTGGTCAGTATG
species | Zea mays |
transcript | GRMZM2G047310_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTTGTATGCATTCTCATTCAAGAACGGGAGACTGGAG GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGEST: gi|101399213|gb|EB821480.1|EB821480
genomic: CTTGTATGCATTCTCATTCAAGAAC-GGTCAGTTGCTgtagattttg ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: CTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGGGAGACTGGAG GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGEST: gi|211106296|gb|FL022814.1|FL022814
genomic: CTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAAC-GGTCAGTTGCTgtagattttg ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: TAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGGG-AGACTGGAEST: gi|211541598|gb|FL022801.1|FL022801
genomic: TAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGGTCAGT-TGCT
EST: TAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGGG-AGACTGGAEST: gi|71439549|gb|DR820599.1|DR820599
genomic: TAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGGTCAGT-TGCT
EST: CTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGGGAGACTGGAG GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGEST: gi|5816386|gb|AI987302.1|AI987302
genomic: CTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAAC-GGTCAGTTGCTgtagattttg ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
EST: CTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAACGGGAGACTGGAG GTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
genomic: CTAGAGAGCCTCACTTGTATGCATTCTCATTCAAGAAC-GGTCAGTTGCTgtagattttg ... gcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATG
tgctcttcttagatctatattttgttttggcatctgattttatgggcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGATGGTACTTGACACACATGGTGAAGTTTTCATTTGGATTGGTCAGTATG
atctgat putative branch site (score: 335)
cttattc putative PPT
atctatattttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattgtcattaaccagggagactggaggtcggtcctcttacacttgctcttcttagatctatattttgttttggcatctgattttatgggcttattcagGTTACTGAGATCTTCAACTTTTCTCAAGATGATTTGTTAACTGAAGACATGATGGTACTTGACACACATGGTGAAGTTTTCATTTGGATTGGTCAGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatctg