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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggagggcgtctgcagtcttgttatttgtactaatcatatgttgtctagtttctactttgttggcgaattccatattataacctaatctatggaaatgcagGACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAGCATTTAATCAAACTTTTCCCAAATAAAGTGATACTCGAGGCACCACAA

Basic information

species Zea mays
transcript GRMZM2G042074_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042074_T02 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g22420.2 (Oryza sativa), 3'ss of exon 15
ggagggcgtctgcagtcttgttatttg--tactaatcatatgtt---gtctagtttctactttgttggcgaattccatattataacctaatctatggaaatgcagGACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAGCATTTAATCAAACTTTTCCCAAATAAAGTGATACTCGAGGCACCACAA
      |   | || |  || ||| |   ||  |  ||||| ||    | | |    |     ||     | ||   ||  || |  |||   | || |||||||||| |||||     || || ||| ||||||||||||||||||||  |||||||| |||  || |||||||||||||||||||   || || ||||| ||
-----accattacaattgtgatatcttcttagcatgcatatattttgatttggaacatgtgacgtgatttattttgctaccatgaattaacacaagggaatgcagGACTTTGATCGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32791863|gb|CD944099.1|CD944099
EST:     TTCTTTCGAAGTTCCCATACAGCCAAACTATACTTGACCTCGCATTACAG                         GACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAG
genomic: TTCTTTCGAAGTTCCCATACAGCCAAACTATACTTGACCTCGCATTACAGgtaacttatt ... ggaaatgcagGACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAG
EST: gi|67033220|gb|CO461969.1|CO461969
EST:     TTCTTTCGAAGTTCCCATACAGCCAAACTATACTTGACCTCGCATTACAG                         GACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAG
genomic: TTCTTTCGAAGTTCCCATACAGCCAAACTATACTTGACCTCGCATTACAGgtaacttatt ... ggaaatgcagGACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAG
EST: gi|6637081|gb|AW261353.1|AW261353
EST:     TTCTTTCGAAGTTCCCATACAGCCAAACTATACTTGACCTCGCATTACAG                         GACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAG
genomic: TTCTTTCGAAGTTCCCATACAGCCAAACTATACTTGACCTCGCATTACAGgtaacttatt ... ggaaatgcagGACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttctactttgttggcgaattccatattataacctaatctatggaaatgcagGACATTGATGCGATAAATGGTAATAATAAAGAAACTTCAAAGGCAGCGAAGCATTTAATCAAACTTTTCCCAAATAAAGTGATACTCGAGGCACCACAA
                    aattccatattataa  TA-rich tract