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...ttgtatccttcctagaaagtcatctgtggacactgggtggaatattaaatgtttgtcgtgttgtcagtcttatggtttccttttgtcctgtcttttccagATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCTTTAGCTCATTTCACCGTTACAGATGTCATTGATTTAGCAGAAGTGCATC
species | Zea mays |
transcript | GRMZM2G039650_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAG ATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCTEST: gi|60341234|gb|DN208207.1|DN208207
genomic: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAGgtaataattt ... tcttttccagATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCT
EST: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAG ATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCTEST: gi|9255072|gb|BE345540.1|BE345540
genomic: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAGgtaataattt ... tcttttccagATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCT
EST: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAG ATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCTEST: gi|89754941|gb|DY685549.1|DY685549
genomic: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAGgtaataattt ... tcttttccagATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCT
EST: TTGAAATCAACCACTGCCCCACAAATTAAGAAGTATTTGAGACCTGTAAG ATGCAATGGCTGATTCCCCTTCCACGTTCTGAGGTCCGCAACCAAATGAGCEST: gi|9255071|gb|BE345539.1|BE345539
genomic: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAGgtaataattt ... tcttttccagATGCAATGGCTGATT-CCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGC
EST: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAG ATGCAATGGCTGATTCCCTTCCACGTTTTGAGCTCCGCAACCAAATGAGCTEST: gi|5607710|gb|AI901377.1|AI901377
genomic: TTGAAATCAACCACTGACCCACAAATTAAGAAGTATCTGAGACCTGTAAGgtaataattt ... tcttttccagATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCT
EST: TCTGAGACCTGTAAG ATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCT
genomic: TCTGAGACCTGTAAGgtaataattt ... tcttttccagATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCT
taaatgtttgtcgtgttgtcagtcttatggtttccttttgtcctgtcttttccagATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCTTTAGCTCATTTCACCGTTACAGATGTCATTGATTTAGCAGAAGTGCATC
tttccttttgtcctgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtatccttcctagaaagtcatctgtggacactgggtggaatattaaatgtttgtcgtgttgtcagtcttatggtttccttttgtcctgtcttttccagATGCAATGGCTGATTCCCTTCCACGTTCTGAGCTCCGCAACCAAATGAGCTTTAGCTCATTTCACCGTTACAGATGTCATTGATTTAGCAGAAGTGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-tgtatcc
- - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt