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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggatgattgctttgaccgcgcagcagtatctgtgctgtgggctcacactcctctgaattgtgtcaactgatgcctgaacatttatttaacaagccatttacccctctttcccaactactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGGGAGAGCGGCTACAGGATAACTTCCACGGCAGCCACCAACGACCAAGCCG

Basic information

species Zea mays
transcript GRMZM2G037923_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os07g07560.2 (Oryza sativa), 3'ss of exon 15
gttaggatgattgctttgaccgcgcagcagt--atctgtg---ctgtgggctcacactcctctga--attgtgtcaactgatgcctga-acatttatttaacaagccatttacccctctttcccaactactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGGGAGAGCGGCTACAGGATAACTTCCACGGCAGCCACCAACGACCAAGCCG
||||| || |||||||   |        | |   ||        ||     | | | |||| |||  |||   | |  |  ||    | | || || |||  ||||    || || | ||  |   |   | | |||||||||| ||||||||||| || || || || |||||||| ||||| |||||||  || ||||| ||||| || |  ||||| || || ||||| || |
gttagaataattgcttgacctagttcatattcagtccacaaatttggcaatttatattcctgtgagcattccattatttactgtagaatatatctacttatgaagc----taacctttttctcatgccctttttagGTTGTAGAATTGGATTTCCTATATCCAAGTGAAGGCATCCATCGGCGATGGGAGACTGGTTACAGAATAACCTCAATAGCAGCAACAAATGACCAGGCTG

upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 15
lower sequence: EFJ38433 (Selaginella moellendorffii), 3'ss of exon 12
gttaggatgattgctttgaccgcgcagcagtatctgtgctgtgggctcacactcctctgaattgtgtcaactgatgcctgaacatttatttaacaa-gccatttacccctctttcccaactactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGGGAGAGCGGCTACAGGATAACTTCCACGGCAGCCACCAACGACCAAGCCG
                                                       ||||  ||    ||   |      | ||| || ||| |||  || || | |            | |||   ||||| || ||| |||||||||| || |||||||| |||||||||||||| |||||  | || ||  | || ||  |||| || || ||    || ||||| |
------------------------------------------------------gtctg--ttaatccattcgggcttcgcacacttgtttgacagcgctatatgc------------attaca--cagGTAGTGGAGCTGGATTTCCTCTATCCCAGCGAAGGCATCCACCGGCGGTGGGATTGTGGATATCGCATCACCGCCACTGCGGCAACTTGGGATCAAGCAG

upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 15
lower sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 12
gttaggatgattgctttgaccgcgcagcagtatctgtgctgtgggctcacactcctctgaattgtgtcaactgatgcctgaacatttatttaacaagccatttacccctctttcccaactactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGGGAGAGCGGCTACAGGATAACTTCCACGGCAGCCACCAACGACCAAGCCG
                                                       ||||  ||    ||   |      | ||| || ||| |||            | || | |     ||    |||| || ||| |||||||||| || |||||||| |||||||||||||| |||||  | || ||  | || ||  |||| || || ||    || ||||| |
------------------------------------------------------gtctg--ttaatccattcgggcttcgcacacttgtttgacag-----------cgctatgcatgacac----agGTAGTGGAGCTGGATTTCCTCTATCCCAGCGAAGGCATCCACCGGCGGTGGGATTGTGGATATCGCATCACCGCCACTGCGGCAACTTGGGATCAAGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21760105|gb|BQ635646.1|BQ635646
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|78023792|gb|DV492179.1|DV492179
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|21432270|gb|BQ547760.1|BQ547760
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|22473314|gb|BU037794.1|BU037794
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|211493560|gb|FL280135.1|FL280135
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|101385454|gb|EB814773.1|EB814773
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|33096596|gb|CF056590.1|CF056590
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|211124333|gb|FL444269.1|FL444269
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|22713641|gb|BU197414.1|BU197414
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|211490684|gb|FL280131.1|FL280131
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|22545509|gb|BU097868.1|BU097868
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|24770058|gb|CA405187.1|CA405187
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|61118390|gb|DN559351.1|DN559351
EST:     AGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: AGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|32858553|gb|CD998234.1|CD998234
EST:     AAGGAATTCCGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: AAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|31355521|gb|CD439878.1|CD439878
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|211490681|gb|FL280128.1|FL280128
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|21987385|gb|BQ778913.1|BQ778913
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|87156443|gb|DY401232.1|DY401232
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAT                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|78083128|gb|DV511521.1|DV511521
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|26559413|gb|CA831648.1|CA831648
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|67012040|gb|CO440789.1|CO440789
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|31356845|gb|CD441202.1|CD441202
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|148933318|gb|EC876975.2|EC876975
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
EST: gi|31350536|gb|CD434893.1|CD434893
EST:     GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAG                         GTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG
genomic: GGAATCGCTGGGGCGTAGTCATGTCAAGGAATTCAGGGTTCTCTACTCAGgttaggatga ... ctactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcctgaacatttatttaacaagccatttacccctctttcccaactactgtcagGTTGTAGAGTTGGATTTCCTGTACCCCAGCGAGGGCATCCACCGGCGCTGGGAGAGCGGCTACAGGATAACTTCCACGGCAGCCACCAACGACCAAGCCG
              atttaac  putative branch site (score: 3)
                               cccctctttcccaact  putative PPT
       aacatttatttaacaa  TA-rich tract