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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaacaattacttcagcctgtatatggtagtctagaatcgatttaccagaacatcttttcaatatgtatttctctccatccatcattcctttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGATCCTACAGTACCCGAACGAGTAAATGTTGCACTGTATGCAGCGCCAGAA

Basic information

species Zea mays
transcript GRMZM2G032222_T01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032222_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os10g37210.1 (Oryza sativa), 3'ss of exon 15
tctaacaattact-tcagcctgtatatggtagtctagaatcgatttaccagaacatcttttcaatatgtatttctct--ccatccatcattcctttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGATCCTACAGTACCCGAACGAGTAAATGTTGCACTGTATGCAGCGCCAGAA
     | ||   | ||    | | | |  |   ||  |||  | |    ||    |    |  ||||    | | ||   |||  || ||  | ||   |||||||||  |||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||  |||||||| || | |||||||| |  ||||| 
---ggctatcgttctccatttttttttcatgaactgaaatgtaatgtggagtgatttacatgcatattctgtacactgatcatgtatgatctcatttatacagGAGCAGCACAAACCATGAGCATGATCAACCTCCTCATCTCCGTTTGAGGGATCCTACAGTACCGGAGAGAGTAAATCTTCCTCTGTATGCTGGACCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76020278|gb|DT947448.1|DT947448
EST:     CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAG                         GAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
genomic: CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAGgtaatgcctg ... tttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
EST: gi|78120295|gb|DV538679.1|DV538679
EST:     CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAG                         GAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
genomic: CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAGgtaatgcctg ... tttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
EST: gi|94479206|gb|EB708164.1|EB708164
EST:     CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAG                         GAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
genomic: CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAGgtaatgcctg ... tttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
EST: gi|71756373|gb|DR954310.1|DR954310
EST:     CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAG                         GAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
genomic: CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAGgtaatgcctg ... tttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
EST: gi|87157160|gb|DY401949.1|DY401949
EST:     CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAG                         GAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
genomic: CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAGgtaatgcctg ... tttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
EST: gi|31353246|gb|CD437603.1|CD437603
EST:     CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAG                         GAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
genomic: CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAGgtaatgcctg ... tttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
EST: gi|21809980|gb|BQ668298.1|BQ668298
EST:     CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAG                         GAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA
genomic: CCTAAACCAGATGGACATATAACATTTGATGTCCCAACATCTTTATACAGgtaatgcctg ... tttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagaacatcttttcaatatgtatttctctccatccatcattcctttgggacagGAGCAATACAAACCATGAGCATGATCAGCCGCCTCATCTCCGCTTGAGGGATCCTACAGTACCCGAACGAGTAAATGTTGCACTGTATGCAGCGCCAGAA
                        tttctctccatccatc  CT-rich tract
           ttttcaatatgtattt  TA-rich tract