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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgactggccatgcatttcctttgcagtggcttccttgtgaatttgcttattctgacaatgtgtctgttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGCTCAGGTCCGTTCCGTACAAGCCGGGAACCCGAGGACCGCAGGAAGCCG

Basic information

species Zea mays
transcript GRMZM2G031107_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031107_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os02g38840.2 (Oryza sativa), 3'ss of exon 15
---------gtttgtgactggccatgcatttcctttgcagt-ggcttccttgtgaatttgcttat-tctgacaatgtgtctgttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGCTCAGGTCCGTTCCGTACAAGCCGGGAACCCGAGGACCGCAGGAAGCCG
          | ||| | || |  ||  |  |  ||||| | ||||  ||||||| |      ||  |||||   ||||  |||    |||||| || ||||| |||||||||||  |||| ||||||||||| |  |||||| | | | || | |||||||||||||||||||| ||||| |  || ||||
gtttgtgctttgtgtaattgacgctgtgtgac--ttgcaatcggctcgcttgtgactgaatgaatacctgacgccgtgttggtt---ttcagGCTGCGTGGGAGATCTTCACTCCGCTGCTGCACGACATCGACGACGGCAAGGTGAAGGCCCTGCCGTACAAGCCGGGAACCCGGGGACCCCCAGAGGCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14203621|gb|BG837298.1|BG837298
EST:     GATAAGAGGAGACCAGCACGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCA-GCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|26456967|gb|CA828550.1|CA828550
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|6031397|gb|AW076299.1|AW076299
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCATGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|211247979|gb|FL192072.1|FL192072
EST:     ACGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCATGACATCGATGGTGGCAAG
genomic: ACGATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|71596396|gb|DR907147.1|DR907147
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAC
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|78077421|gb|DV505855.1|DV505855
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|22521339|gb|BU080150.1|BU080150
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|78119963|gb|DV538347.1|DV538347
EST:     GATAAGAGGAGACCAGCAGCCCTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|45213774|gb|CK850005.1|CK850005
EST:     GATGAGCTGAGG                         GCCGCACTGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAA
genomic: GATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCA-TGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAA
EST: gi|88750685|gb|DY534826.1|DY534826
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|109179593|gb|EC380097.1|EC380097
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|51592845|gb|CV071991.1|CV071991
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|47962266|gb|CN844975.1|CN844975
EST:     GATAAGAGGAGACCAGCAGTACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|76281884|gb|DV021452.1|DV021452
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCTTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|78544145|gb|DV621643.1|DV621643
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|71595987|gb|DR906738.1|DR906738
EST:     TCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: TCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|22521338|gb|BU080149.1|BU080149
EST:     TTCGTTCGCCGAGATGAGCTGAGG                         GCCCCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: TTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|78109019|gb|DV527436.1|DV527436
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
EST: gi|62550472|gb|DN830892.1|DN830892
EST:     GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGG                         GCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG
genomic: GATAAGAGGAGACCAGCAGCACTTCGTTCGCCGAGATGAGCTGAGGgtttgtgact ... ttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagtggcttccttgtgaatttgcttattctgacaatgtgtctgttggtctcagGCCGCATGGGAAATCTTCACTCCTTTGCTTCACGACATCGATGGTGGCAAGCTCAGGTCCGTTCCGTACAAGCCGGGAACCCGAGGACCGCAGGAAGCCG
                            ttctgac  putative branch site (score: 2)
                tgaattt  TA-rich tract