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gtcagaactcaaaatctttcatttgtttagtaactggtggacaaaaatatgaggtttacacagtagtgaaactgaatagttacaacactggatttttactttgagtttcatattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCAAAGGTAGACTCATTTCGTCATGAGTATAGCTCAATGGCATGCACAGTCGA
species | Zea mays |
transcript | GRMZM2G028535_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTEST: gi|33094388|gb|CF054382.1|CF054382
genomic: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGT
EST: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGCTGAAAGTEST: gi|33091121|gb|CF051115.1|CF051115
genomic: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGT
EST: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACGTGACAAGTTGAAAGTAEST: gi|60344250|gb|DN211223.1|DN211223
genomic: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTA
EST: ACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCAAEST: gi|32931519|gb|CF036331.1|CF036331
genomic: ACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCAA
EST: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTAEST: gi|24934245|gb|CA452463.1|CA452463
genomic: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTA
EST: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTEST: gi|60355192|gb|DN222165.1|DN222165
genomic: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGT
EST: ACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCAAEST: gi|32932079|gb|CF036891.1|CF036891
genomic: ACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCAA
EST: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCEST: gi|61118748|gb|DN559709.1|DN559709
genomic: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACC
EST: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAG GAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAACTGAAAGTACCAA
genomic: TAACAAGAGTGAGGGACTTGATGATCTATTAGTGGAACTTGAAAAGGAAGgtcagaactc ... catattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCAA
tagtgaaactgaatagttacaacactggatttttactttgagtttcatattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCAAAGGTAGACTCATTTCGTCATGAGTATAGCTCAATGGCATGCACAGTCGA
atttttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagaactcaaaatctttcatttgtttagtaactggtggacaaaaatatgaggtttacacagtagtgaaactgaatagttacaacactggatttttactttgagtttcatattgcagGAGTAGTTATTTATGGTGGACCTGTTGCACATGACAAGTTGAAAGTACCAAAGGTAGACTCATTTCGTCATGAGTATAGCTCAATGGCATGCACAGTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA