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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaactctactattataatctgaaatagcttaatcctttgtgcattttttagaagttgttctggcagtgtcagtaactgaatattgtgttccttggagcagTACATAAATATGAAGACCCAGAAGATCTCCAAACTTCTTAACAAGCGATTTACAACACCAGTTTGGATTAAG

Basic information

species Zea mays
transcript GRMZM2G023858_T03
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023858_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os03g52770.1 (Oryza sativa), 3'ss of exon 15
-aaactctactattataatctgaaatagctta-atcctttgtgcattttttagaagttgttctggcagtgtca-gtaactgaatattgtgttccttggagcagTACATAAATATGAAGACCCAGAAGATCTCCAAACTTCTTAACAAGCGATTTACAACACCAGTTTGGATTAAG
  |  |||| ||| |   | |  | |  |||| |||  ||  | |   |||       ||||     | | ||  ||||  || ||||  |||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||
atatatctaatatcactgttt--attttcttatatctgttaagtacaatttgtcttgagttcgctacgcgacatataaccaaacattgacttccttgg-gcagTACATAAATATGAAGACACAGAAGATCTCCAAACTTCTTAATAAACGATTTACAACTCCAGTCTGGATAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31356087|gb|CD440444.1|CD440444
EST:     GAGAAATATGTCGGCTATATCGATCATCTGGAGAGAAATTCTTGCACCAT                         TACATAAATATGAAGACCCAGAAGATCTCCAAACTTCTTAACAAGCGATTT
genomic: GAGAAATATGTCGGCTATATCGATCATCTGGAGAGAAATTCTTGCACCATgtaggaagcg ... cttggagcagTACATAAATATGAAGACCCAGAAGATCTCCAAACTTCTTAACAAGCGATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttagaagttgttctggcagtgtcagtaactgaatattgtgttccttggagcagTACATAAATATGAAGACCCAGAAGATCTCCAAACTTCTTAACAAGCGATTTACAACACCAGTTTGGATTAAG
                        cagtaac  putative branch site (score: 2)
                                        tgttcctt  putative PPT
                               tgaatatt  TA-rich tract