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gttgaattctgtaacacttgtttgcaggaatgttaggacagcttattgtcagttatcttagggagaaagctaatggtggtaattcttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATCCTCCTCCTGAAAAGGACTATGAAGTATATTTCAAAGAACTCAAAGAAG
species | Zea mays |
transcript | GRMZM2G019358_T06 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGGGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|13562283|gb|BG550503.1|BG550503
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|7304470|gb|AW600409.1|AW600409
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|13125927|gb|BG316602.1|BG316602
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|16377470|gb|BI991944.1|BI991944
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|60352340|gb|DN219313.1|DN219313
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|7216720|gb|AW562842.1|AW562842
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|12968100|gb|BG265047.1|BG265047
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|71760712|gb|DR958649.1|DR958649
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|211050961|gb|FL383301.1|FL383301
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: CCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|16378431|gb|BI992443.1|BI992443
genomic: CCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACCTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|211357416|gb|FL471654.1|FL471654
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|148936819|gb|EC880960.2|EC880960
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGTTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|12967873|gb|BG264820.1|BG264820
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACATTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATEST: gi|211503638|gb|FL133350.1|FL133350
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
EST: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAG GTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
genomic: TTTGTGTAGCAGCTCTGGCAAGCCCAGATGCTGTGGGCAAAACTTTCGAGgttgaattct ... ttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAAT
gcttattgtcagttatcttagggagaaagctaatggtggtaattcttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATCCTCCTCCTGAAAAGGACTATGAAGTATATTTCAAAGAACTCAAAGAAG
agctaat putative branch site (score: 39)
ttcttat putative PPT
taattcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaattctgtaacacttgtttgcaggaatgttaggacagcttattgtcagttatcttagggagaaagctaatggtggtaattcttatgatcagGTCAAGAGCACTGTTCCATTCAGCGAACCGTATGTGATTGACCCTGCAAATCCTCCTCCTGAAAAGGACTATGAAGTATATTTCAAAGAACTCAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG