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...gaaagtttgaccctctacctgtaaggctgtaatgatcgaggacactgctagtgttatcttactagcttctaaacttagtttgctcatgtgttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGCTGTCTTGACACACAAGGGAAGAAGTGCAGACTCTGGCCACTATGTTGG
species | Zea mays |
transcript | GRMZM2G017086_T03 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|12968043|gb|BG264990.1|BG264990
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGEST: gi|5296339|gb|AI783109.1|AI783109
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|5932702|gb|AW057063.1|AW057063
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
tgctagtgttatcttactagcttctaaacttagtttgctcatgtgttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGCTGTCTTGACACACAAGGGAAGAAGTGCAGACTCTGGCCACTATGTTGG
ttctaaa putative branch site (score: 2)
ttatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtttgaccctctacctgtaaggctgtaatgatcgaggacactgctagtgttatcttactagcttctaaacttagtttgctcatgtgttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGCTGTCTTGACACACAAGGGAAGAAGTGCAGACTCTGGCCACTATGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT