1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagtaaaatgaaaatttaccttttttaaatatctgtttgtggttgtaaaaagtagtgagccatgcttactttttgaacgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG
species | Zea mays |
transcript | GRMZM2G010823_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TCTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|60357469|gb|DN224442.1|DN224442
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TCTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|149081506|gb|EE170642.2|EE170642
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TCTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|91868642|gb|EB400097.1|EB400097
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TGTTAGTGACATCTGTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|149089383|gb|EE178622.2|EE178622
genomic: TGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TCTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|6022572|gb|AW067384.1|AW067384
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TCTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|5901092|gb|AW042192.1|AW042192
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TCTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|78022604|gb|DV490991.1|DV490991
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TCTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|211208053|gb|FL436834.1|FL436834
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TTTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAEST: gi|8930245|gb|BE225009.1|BE225009
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
EST: TCTCTGATGTTAGTGACATCTTTGAACCCT AAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
genomic: TCTCTGATGTTAGTGACATCTTTGAACCCTgtaagtaaaa ... acgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAA
tctgtttgtggttgtaaaaagtagtgagccatgcttactttttgaacgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG
tgcttac putative branch site (score: 378)
ttgtaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaaatgaaaatttaccttttttaaatatctgtttgtggttgtaaaaagtagtgagccatgcttactttttgaacgattgcagAAAATTGGCTATGACAATGCTGCAGCTGTTGCTAAGAAAGCCCACAAAGAAGGAACCACGTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG